Author: plessy Date: 2009-01-12 15:06:59 +0000 (Mon, 12 Jan 2009) New Revision: 2967
Modified: trunk/packages/velvet/trunk/debian/README.Debian trunk/packages/velvet/trunk/debian/changelog trunk/packages/velvet/trunk/debian/control trunk/packages/velvet/trunk/debian/copyright trunk/packages/velvet/trunk/debian/install trunk/packages/velvet/trunk/debian/patches/20_external_zlib.patch trunk/packages/velvet/trunk/debian/watch Log: Polished copyright file, fixed minor errors; ready for upload. Modified: trunk/packages/velvet/trunk/debian/README.Debian =================================================================== --- trunk/packages/velvet/trunk/debian/README.Debian 2009-01-12 10:38:45 UTC (rev 2966) +++ trunk/packages/velvet/trunk/debian/README.Debian 2009-01-12 15:06:59 UTC (rev 2967) @@ -1,8 +1,6 @@ velvet for Debian ----------------- -This is just a draft. In particular, I cut-pasted some compilation options from -the web until the building worked, and I do not know that I am doing. Use it at -your own risk ! +Third party scripts have been placed in /usr/share/velvet. - -- Charles Plessy <[email protected]> Thu, 19 Jun 2008 11:57:43 +0900 + -- Charles Plessy <[email protected]> Tue, 13 Jan 2009 00:06:25 +0900 Modified: trunk/packages/velvet/trunk/debian/changelog =================================================================== --- trunk/packages/velvet/trunk/debian/changelog 2009-01-12 10:38:45 UTC (rev 2966) +++ trunk/packages/velvet/trunk/debian/changelog 2009-01-12 15:06:59 UTC (rev 2967) @@ -1,4 +1,4 @@ -velvet (0.7.20-1) UNRELEASED; urgency=low +velvet (0.7.24-1) unstable; urgency=low * Initial release (Closes: #487026) Modified: trunk/packages/velvet/trunk/debian/control =================================================================== --- trunk/packages/velvet/trunk/debian/control 2009-01-12 10:38:45 UTC (rev 2966) +++ trunk/packages/velvet/trunk/debian/control 2009-01-12 15:06:59 UTC (rev 2967) @@ -31,6 +31,7 @@ Package: velvet-example Architecture: all -Description: Example data for the Velvet sequence assembler. +Depends: ${misc:Depends} +Description: Example data for the Velvet sequence assembler This package contains the example data distributed in the sources of Velvet, a de novo genomic assembler. Modified: trunk/packages/velvet/trunk/debian/copyright =================================================================== --- trunk/packages/velvet/trunk/debian/copyright 2009-01-12 10:38:45 UTC (rev 2966) +++ trunk/packages/velvet/trunk/debian/copyright 2009-01-12 15:06:59 UTC (rev 2967) @@ -1,19 +1,61 @@ -X-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat -X-Debianized-By: Charles Plessy <[email protected]> -X-Debinized-Date: Thu, 19 Jun 2008 11:57:43 +0900. -X-Upstream-Author: Daniel Zerbino, +Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat +Upstream-Name: Velvet +Upstream-Maintainer: Daniel Zerbino, John-Mark Gurney (Fibonacci heap implementation), Guy Slater (memory management routines), Ewan Birney (hashing function) -X-Homepage: http://www.ebi.ac.uk/~zerbino/velvet/ +Upstream-Source: http://www.ebi.ac.uk/~zerbino/velvet/velvet_0.7.24.tgz Files: * -Copyright: (C) 2006-2008 Daniel Zerbino -License: GPL +Copyright: © 2006-2008 Daniel Zerbino +License: GPL-2+ + This program is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License along + with this program; if not, write to the Free Software Foundation, Inc., + 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. X-Comment: On Debian systems, the complete text of the GNU General Public License can be found in `/usr/share/common-licenses/GPL'. +Files: /third-party/afg_handling/* +Copyright: © 2008 Simon Gladman <[email protected]> +License: GPL-2+ + +Files: /third-party/z-lib-1.2.3 +Copyright: © 1995-1998 Jean-loup Gailly and Mark Adler +License: + This software is provided 'as-is', without any express or implied + warranty. In no event will the authors be held liable for any damages + arising from the use of this software. + . + Permission is granted to anyone to use this software for any purpose, + including commercial applications, and to alter it and redistribute it + freely, subject to the following restrictions: + . + 1. The origin of this software must not be misrepresented; you must not + claim that you wrote the original software. If you use this software + in a product, an acknowledgment in the product documentation would be + appreciated but is not required. + 2. Altered source versions must be plainly marked as such, and must not be + misrepresented as being the original software. + 3. This notice may not be removed or altered from any source distribution. + . + Jean-loup Gailly Mark Adler + [email protected] [email protected] + +Files: third-party/layout/* +Copyright: © 2008 Paul Harrison ([email protected]) +License: GPL-2+ + Files: debian/* -Copyright: 2008 Andreas Tille <[email protected]>, - Charles Plessy <[email protected]> +Copyright: 2008-2009 Charles Plessy <[email protected]> + 2008 Andreas Tille <[email protected]>, License: Same as velvet Modified: trunk/packages/velvet/trunk/debian/install =================================================================== --- trunk/packages/velvet/trunk/debian/install 2009-01-12 10:38:45 UTC (rev 2966) +++ trunk/packages/velvet/trunk/debian/install 2009-01-12 15:06:59 UTC (rev 2967) @@ -1,2 +1,4 @@ velvetg usr/bin velveth usr/bin +third-party/afg_handling/ usr/share/velvet +third-party/layout/ usr/share/velvet Modified: trunk/packages/velvet/trunk/debian/patches/20_external_zlib.patch =================================================================== --- trunk/packages/velvet/trunk/debian/patches/20_external_zlib.patch 2009-01-12 10:38:45 UTC (rev 2966) +++ trunk/packages/velvet/trunk/debian/patches/20_external_zlib.patch 2009-01-12 15:06:59 UTC (rev 2967) @@ -1,3 +1,7 @@ +Author: Andreas Tille +Description: To build velvet on Debian's zlib +License: Same as velvet +Forwarded: Daniel Zerbino (zerbino <at> ebi <dot> ac <dot> uk) --- velvet_0.7.20.orig/src/readSet.c +++ velvet_0.7.20/src/readSet.c @@ -28,11 +28,7 @@ Modified: trunk/packages/velvet/trunk/debian/watch =================================================================== --- trunk/packages/velvet/trunk/debian/watch 2009-01-12 10:38:45 UTC (rev 2966) +++ trunk/packages/velvet/trunk/debian/watch 2009-01-12 15:06:59 UTC (rev 2967) @@ -1,12 +1,2 @@ version=3 - -# just make the 'latest' link very low to obtain the tarball with real version number -# Unfortunately the latest version number is not linked explicitely at the upstream -# homepage - ask upstream to use an explicite link? -# At least the file exists on the webserver if you try to download it - -opts="uversionmangle=s/latest/0.0.0/" \ -http://www.ebi.ac.uk/~zerbino/velvet velvet_(.*)\.tgz - -# opts="uversionmangle=s/latest/0.0.0/" \ -# http://www.ebi.ac.uk/~zerbino/velvet/velvet_(.*)\.tgz +http://www.ebi.ac.uk/~zerbino/velvet/velvet_([.\d]*).tgz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
