Author: plessy
Date: 2009-02-25 04:49:29 +0000 (Wed, 25 Feb 2009)
New Revision: 3135
Removed:
trunk/packages/njplot/trunk/debian/get-orig-source
Modified:
trunk/packages/njplot/trunk/debian/changelog
trunk/packages/njplot/trunk/debian/control
trunk/packages/njplot/trunk/debian/rules
Log:
Cosmetic work and minor fixes.
* debian/control:
- Mention that the trees are phylogenetic and in Newick format.
Closes: #517010
- Added missing comma in the Depends field.
* debian/get-orig-source: obsolete, removed. (Also in debian/rules).
Modified: trunk/packages/njplot/trunk/debian/changelog
===================================================================
--- trunk/packages/njplot/trunk/debian/changelog 2009-02-23 08:08:23 UTC
(rev 3134)
+++ trunk/packages/njplot/trunk/debian/changelog 2009-02-25 04:49:29 UTC
(rev 3135)
@@ -1,3 +1,13 @@
+njplot (2.3-2) UNRELEASED; urgency=low
+
+ * debian/control:
+ - Mention that the trees are phylogenetic and in Newick format.
+ Closes: #517010
+ - Added missing comma in the Depends field.
+ * debian/get-orig-source: obsolete, removed. (Also in debian/rules).
+
+ -- Charles Plessy <[email protected]> Wed, 25 Feb 2009 13:12:50 +0900
+
njplot (2.3-1) unstable; urgency=low
* New upstream release: NJplot can draw multibranched trees with or without
Modified: trunk/packages/njplot/trunk/debian/control
===================================================================
--- trunk/packages/njplot/trunk/debian/control 2009-02-23 08:08:23 UTC (rev
3134)
+++ trunk/packages/njplot/trunk/debian/control 2009-02-25 04:49:29 UTC (rev
3135)
@@ -12,9 +12,9 @@
Package: njplot
Architecture: any
-Depends: ${shlibs:Depends} ${misc:Depends}
-Description: A tree drawing program
- NJplot is able to draw any tree expressed in the standard
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Description: A phylogenetic tree drawing program
+ NJplot is able to draw any dendrogram expressed in the Newick standard
phylogenetic tree format (e.g., the format used by the Phylip package).
NJplot is especially convenient for rooting the unrooted trees
obtained from parsimony, distance or maximum likelihood tree-building
Deleted: trunk/packages/njplot/trunk/debian/get-orig-source
===================================================================
--- trunk/packages/njplot/trunk/debian/get-orig-source 2009-02-23 08:08:23 UTC
(rev 3134)
+++ trunk/packages/njplot/trunk/debian/get-orig-source 2009-02-25 04:49:29 UTC
(rev 3135)
@@ -1,42 +0,0 @@
-#!/bin/sh -e
-echo This is outdated, because upstream switched to proper version numbering
-exit
-
-NAME=njplot
-UTARBALL="$NAME"-unrooted.tar
-rm -rf tmp
-mkdir -p tmp
-cd tmp
-wget --quiet ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/"$NAME"/"$UTARBALL";
-tar -xf "$UTARBALL"
-rm -f "$UTARBALL"
-VERSION=`ls -lt | grep '^.rw.r' | sed -e '2,$d' -e 's/^.[-rwxr]\{9\} [0-9]
\w\+ \w\+[[:space:]]\+[0-9]\+
\([0-9]\{4\}\)-\([0-9]\{2\}\)-\([0-9]\{2\}\).*/0.\1\2\3/'`
-mkdir "$NAME"-"$VERSION"
-mv *.c makefile "$NAME"-"$VERSION"
-cd "$NAME"-"$VERSION"
-
-MOREFILES="$NAME.help README bigtest.phb multi.phb test.ph"
-for mf in $MOREFILES ; do
- wget --quiet ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/"$NAME"/$mf
-done
-
-wget --quiet http://pbil.univ-lyon1.fr/software/njplot.html
-wget --quiet http://pbil.univ-lyon1.fr/binaries/njplot.gif
-wget --quiet http://pbil.univ-lyon1.fr/help/helpers.html
-sed -e '/<TABLE BORDER=4 CELLPADDING=8>/,/<\/TABLE>/d' njplot.html \
- -e 's/"\/binaries\/\(njplot.gif"\)/"\1/' \
- -e 's/"\/help\/\(helpers.html"\)/"\1/' \
- -e 's/"\(\/comments.html"\)/"http:\/\/pbil.univ-lyon1.fr\1/' \
- -e 's/"\(\/pbil.html">\)<IMG
SRC="\/binaries\/home.gif">/"http:\/\/pbil.univ-lyon1.fr\1PBIL home page/' \
- -e '/<I>Back to PBIL home page<\/I>/d' \
- > njplot_.html
-touch -r njplot.html njplot_.html
-mv njplot_.html njplot.html
-
-cd ..
-
-GZIP=-9 tar -czf "$NAME"_"$VERSION".orig.tar.gz "$NAME"-"$VERSION"
-
-mv "$NAME"_"$VERSION".orig.tar.gz ..
-cd ..
-rm -rf tmp
Modified: trunk/packages/njplot/trunk/debian/rules
===================================================================
--- trunk/packages/njplot/trunk/debian/rules 2009-02-23 08:08:23 UTC (rev
3134)
+++ trunk/packages/njplot/trunk/debian/rules 2009-02-25 04:49:29 UTC (rev
3135)
@@ -12,9 +12,6 @@
DEB_OPT_FLAG +=-c -I/usr/include/ncbi -DNO_PDF -DWIN_MOTIF
-DHELPFILENAME=\\\"/usr/share/njplot/njplot.help\\\"
-get-orig-source:
- . debian/get-orig-source
-
# in case the original makefile is in place which has no clean target
#clean::
# rm -f *.o njplot unrooted newicktops newicktotxt add_root
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