Author: plessy Date: 2009-04-08 11:19:24 +0000 (Wed, 08 Apr 2009) New Revision: 3274
Modified: trunk/packages/last-align/trunk/debian/changelog trunk/packages/last-align/trunk/debian/control trunk/packages/last-align/trunk/debian/copyright trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-scripts Log: New upstream relase. * New upstream release. - maf-join.py: joins pairwise alignments into multiple alignments. - Changed lastal default gap existence cost for DNA to 7. - Changed lastal default gapped score threshold for DNA to 40. - maf-swap.py: Added -n option to move any sequence to the top. - Allow suffixes K(ibibyte), M(ebibyte), and G(ibibyte) for sizes. - Plus other bugfixes and improvements, please refer Upstream's changelog. * Incremented Standards-Version in debian/control to reflect conformance with Policy 3.8.1 (no changes needed). * Simplified machine-readable debian/copyright file. * last-align.doc-base.last-align-scripts: last-scripts.txt is now compressed. Modified: trunk/packages/last-align/trunk/debian/changelog =================================================================== --- trunk/packages/last-align/trunk/debian/changelog 2009-04-08 11:18:21 UTC (rev 3273) +++ trunk/packages/last-align/trunk/debian/changelog 2009-04-08 11:19:24 UTC (rev 3274) @@ -1,3 +1,19 @@ +last-align (48-1) unstable; urgency=low + + * New upstream release. + - maf-join.py: joins pairwise alignments into multiple alignments. + - Changed lastal default gap existence cost for DNA to 7. + - Changed lastal default gapped score threshold for DNA to 40. + - maf-swap.py: Added -n option to move any sequence to the top. + - Allow suffixes K(ibibyte), M(ebibyte), and G(ibibyte) for sizes. + - Plus other bugfixes and improvements, please refer Upstream's changelog. + * Incremented Standards-Version in debian/control to reflect conformance + with Policy 3.8.1 (no changes needed). + * Simplified machine-readable debian/copyright file. + * last-align.doc-base.last-align-scripts: last-scripts.txt is now compressed. + + -- Charles Plessy <[email protected]> Wed, 08 Apr 2009 19:31:28 +0900 + last-align (42-1) unstable; urgency=low * New upstream release: Modified: trunk/packages/last-align/trunk/debian/control =================================================================== --- trunk/packages/last-align/trunk/debian/control 2009-04-08 11:18:21 UTC (rev 3273) +++ trunk/packages/last-align/trunk/debian/control 2009-04-08 11:19:24 UTC (rev 3274) @@ -5,7 +5,7 @@ DM-Upload-Allowed: yes Uploaders: Charles Plessy <[email protected]> Build-Depends: debhelper (>= 7), cdbs -Standards-Version: 3.8.0 +Standards-Version: 3.8.1 Homepage: http://last.cbrc.jp/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/last-align/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/last-align/trunk/ Modified: trunk/packages/last-align/trunk/debian/copyright =================================================================== --- trunk/packages/last-align/trunk/debian/copyright 2009-04-08 11:18:21 UTC (rev 3273) +++ trunk/packages/last-align/trunk/debian/copyright 2009-04-08 11:19:24 UTC (rev 3274) @@ -1,8 +1,8 @@ Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat -Upstream-Author: Martin C. Frith, Michiaki Hamada and Paul B. Horton <[email protected]> -Upstream-Source: http://last.cbrc.jp/archive/last-42.zip +Name: LAST +Maintainer: Martin C. Frith, Michiaki Hamada and Paul B. Horton <[email protected]> +Source: http://last.cbrc.jp/archive/last-48.zip -Files: * Copyright: © 2008–2009 Martin C. Frith, Michiaki Hamada and Paul B. Horton <[email protected]> License: GPL-3+ This program is free software: you can redistribute it and/or modify @@ -17,17 +17,17 @@ . You should have received a copy of the GNU General Public License along with this program. If not, see <http://www.gnu.org/licenses/>. -X-Comment: On Debian systems the full text of the GNU General Public License +Comment: On Debian systems the full text of the GNU General Public License can be found in the `/usr/share/common-licenses/GPL-3' file. Files: CA_code/* Copyright: not copyrighted -X-Comment: Public domain code from Yi-Kuo Yu & Stephen Altschul, NCBI +Comment: Public domain code from Yi-Kuo Yu & Stephen Altschul, NCBI Files: CA_code/lambda_calculator.c Copyright: © 2008 Michiaki Hamada License: GPL-3+ -X-Comment: Adapted from public domain code by Yi-Kuo Yu, NCBI +Comment: Adapted from public domain code by Yi-Kuo Yu, NCBI Files: CA_code/lambda_calculator.h Copyright: © 2008 Michiaki Hamada Modified: trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-scripts =================================================================== --- trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-scripts 2009-04-08 11:18:21 UTC (rev 3273) +++ trunk/packages/last-align/trunk/debian/last-align.doc-base.last-align-scripts 2009-04-08 11:19:24 UTC (rev 3274) @@ -6,4 +6,4 @@ Section: Science/Biology Format: text -Files: /usr/share/doc/last-align/last-scripts.txt +Files: /usr/share/doc/last-align/last-scripts.txt.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
