Author: plessy Date: 2009-04-21 12:52:03 +0000 (Tue, 21 Apr 2009) New Revision: 3309
Added: trunk/packages/glam2/trunk/debian/reference Modified: trunk/packages/glam2/trunk/debian/changelog trunk/packages/glam2/trunk/debian/control Log: Simplified long description and moved bibliographic references to a new file. Modified: trunk/packages/glam2/trunk/debian/changelog =================================================================== --- trunk/packages/glam2/trunk/debian/changelog 2009-04-21 11:21:14 UTC (rev 3308) +++ trunk/packages/glam2/trunk/debian/changelog 2009-04-21 12:52:03 UTC (rev 3309) @@ -1,3 +1,10 @@ +glam2 (1064-2) unstable; urgency=low + + * debian/control, debian/reference: simplified long description and moved + bibliographic references to a new file. + + -- Charles Plessy <[email protected]> Tue, 21 Apr 2009 21:49:54 +0900 + glam2 (1064-1) unstable; urgency=low [ Charles Plessy ] Modified: trunk/packages/glam2/trunk/debian/control =================================================================== --- trunk/packages/glam2/trunk/debian/control 2009-04-21 11:21:14 UTC (rev 3308) +++ trunk/packages/glam2/trunk/debian/control 2009-04-21 12:52:03 UTC (rev 3309) @@ -19,17 +19,11 @@ pattern: typical examples are the TATA box and the CAAX prenylation motif. The main innovation of GLAM2 is that it allows insertions and deletions in motifs. . - The package includes these programs: - glam2: discovering motifs shared by a set of sequences; - glam2scan: finding matches, in a sequence database, to a motif discovered - by glam2; - glam2format: converting glam2 motifs to standard alignment formats; - glam2mask: masking glam2 motifs out of sequences, so that weaker motifs - can be found; - glam2-purge: removing highly similar members of a set of sequences. + This package includes programs for discovering motifs shared by a set of + sequences and finding matches to these motifs in a sequence database, as well + as utilities for converting glam2 motifs to standard alignment formats, + masking glam2 motifs out of sequences so that weaker motifs can be found, and + removing highly similar members of a set of sequences. . - In this package, the fast Fourier algorithm (FFT) was enabled for glam2. - . - If you use GLAM2, please cite: MC Frith, NFW Saunders, B Kobe, TL Bailey - (2008) Discovering sequence motifs with arbitrary insertions and deletions, - PLoS Computational Biology (in press). + In this binary package, the fast Fourier algorithm (FFT) was enabled for the + glam2 program. Added: trunk/packages/glam2/trunk/debian/reference =================================================================== --- trunk/packages/glam2/trunk/debian/reference (rev 0) +++ trunk/packages/glam2/trunk/debian/reference 2009-04-21 12:52:03 UTC (rev 3309) @@ -0,0 +1,13 @@ +...@article{10.1371/journal.pcbi.1000071, + author = {Frith, Martin C. AND Saunders, Neil F. W. AND Kobe, Bostjan AND Bailey, Timothy L.}, + journal = {PLoS Comput Biol}, + publisher = {Public Library of Science}, + title = {Discovering Sequence Motifs with Arbitrary Insertions and Deletions}, + year = {2008}, + month = {05}, + volume = {4}, + url = {http://dx.plos.org/10.1371%2Fjournal.pcbi.1000071}, + pages = {e1000071}, + number = {5}, + doi = {10.1371/journal.pcbi.1000071} +} Property changes on: trunk/packages/glam2/trunk/debian/reference ___________________________________________________________________ Added: svn:mergeinfo + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
