Author: smoe-guest Date: 2009-05-22 21:34:13 +0000 (Fri, 22 May 2009) New Revision: 3413
Added: trunk/packages/R/r-other-mott-happy/ trunk/packages/R/r-other-mott-happy/trunk/ trunk/packages/R/r-other-mott-happy/trunk/debian/ Removed: trunk/packages/R/r-other-mott-happy/trunk/debian/watch Modified: trunk/packages/R/r-other-mott-happy/trunk/debian/changelog trunk/packages/R/r-other-mott-happy/trunk/debian/control trunk/packages/R/r-other-mott-happy/trunk/debian/copyright trunk/packages/R/r-other-mott-happy/trunk/debian/rules Log: This package is a sister-program to R/qtl, allowing for the analysis of disease-associated loci. Modified: trunk/packages/R/r-other-mott-happy/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-cran-combinat/trunk/debian/changelog 2009-05-13 07:47:49 UTC (rev 3377) +++ trunk/packages/R/r-other-mott-happy/trunk/debian/changelog 2009-05-22 21:34:13 UTC (rev 3413) @@ -1,12 +1,5 @@ -r-cran-combinat (0.0-6-2) unstable; urgency=low +r-other-mott-happy (2.1-1) unstable; urgency=low - * Obeying Dirk's pledge to be removed from the uploaders list - * debian/control adheres better to policy 3.8.0 + * Initial release (closes: #530007). - -- Steffen Moeller <[email protected]> Thu, 15 Jan 2009 14:23:54 +0100 - -r-cran-combinat (0.0-6-1) unstable; urgency=low - - * Initial release (closes: #492112). - - -- Steffen Moeller <[email protected]> Wed, 23 Jul 2008 18:27:42 +0200 + -- Steffen Moeller <[email protected]> Fri, 22 May 2009 21:31:12 +0200 Modified: trunk/packages/R/r-other-mott-happy/trunk/debian/control =================================================================== --- trunk/packages/R/r-cran-combinat/trunk/debian/control 2009-05-13 07:47:49 UTC (rev 3377) +++ trunk/packages/R/r-other-mott-happy/trunk/debian/control 2009-05-22 21:34:13 UTC (rev 3413) @@ -1,16 +1,34 @@ -Source: r-cran-combinat -Section: math +Source: r-other-mott-happy +Section: gnu-r Priority: optional Maintainer: Debian-Med Packaging Team <[email protected]> Uploaders: Steffen Moeller <[email protected]> -Build-Depends: debhelper (>= 5.0.0), cdbs, r-base-dev -Standards-Version: 3.8.0 -Homepage: http://cran.r-project.org/web/packages/combinat -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-combinat/trunk/?rev=0&sc=0 -Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-combinat/trunk/ +Build-Depends: debhelper (>= 5.0.0), cdbs, r-base-dev, r-cran-g.data +Standards-Version: 3.8.1 +Homepage: http://www.well.ox.ac.uk/happy/happyR.shtml +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-other-mott-happy/trunk/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-other-mott-happy/trunk/ -Package: r-cran-combinat -Architecture: all -Depends: ${shlibs:Depends}, r-base-core -Description: GNU R package with utilities for combinatorics - The R library provides routines for combinatorics. +Package: r-other-mott-happy +Architecture: any +Depends: ${shlibs:Depends}, r-base-core, r-cran-g.data +Description: GNU R package for fine-mapping complex diseases + The idea behind this package is that when multiple strains of + animals that differ in their susceptibility to multiple diseases + are bread over multiple generations, then one can analyse the + contribution that a particular genetic locus has to each of those + diseases. While in the past this approach has been performed + for one disease at a time, this tool extends the statistics + for allowing multiple crosses and thus save animal lifes. A larger + stock of animals with more generations to keep them will further + help producing larger numbers of observable cross-over events + and thus help increasing the resolution of the mapping. + . + happy is an R interface into the HAPPY C package for fine-mapping + Quantitative Trait Loci (QTL) in Heterogenous Stocks (HS). An HS is + an advanced intercross between (usually eight) founder inbred strains + of mice. HS are suitable for fine-mapping QTL. The happy package is + an extension of the original C program happy; it uses the C code to + compute the probability of descent from each of the founders, at each + locus position, but the happy packager allows a much richer range of + models to be fit to the data. Modified: trunk/packages/R/r-other-mott-happy/trunk/debian/copyright =================================================================== --- trunk/packages/R/r-cran-combinat/trunk/debian/copyright 2009-05-13 07:47:49 UTC (rev 3377) +++ trunk/packages/R/r-other-mott-happy/trunk/debian/copyright 2009-05-22 21:34:13 UTC (rev 3413) @@ -1,20 +1,16 @@ -The R library combinat was written by Scott Chasalow -<[email protected]> with contributions by Alan Zaslavsky -and is maintained by Vince Carey <[email protected]>. +The R library combinat was written by Richard Mott +<[email protected]> and is also maintained by him. -This package was created by Steffen Moeller <[email protected]>, -based on work for the r-cran-rodbc package of Dirk -Eddelbuettel <[email protected]>. +This package was created by Steffen Moeller <[email protected]>. -The sources were downloaded from http://cran.r-project.org/src/contrib/. +The sources were downloaded from http://www.well.ox.ac.uk/happy/happyR.shtml. -The package was renamed from its upstream name 'combinat' to -'r-cran-combinat' to highlight the fact that is it a package for R within -the CRAN archive. +The package was renamed from its upstream name 'happy' to +'r-other-mott-happy' in harmony with the R packaging policy to indicate +that the package is external to the CRAN or BioC repositories. -Combinat is copyright 1994-1997 of Scott Chasalow, with contributions -from Alan Zaslavsky and released under the GNU General Public License -(GPL) version 2. +happy is copyright 1995-2008 of Richard Mott, and released under the +GNU General Public License (GPL) version 2 or later versions. -On a Debian GNU/Linux system, the GPL license is included in the file -/usr/share/common-licenses/GPL. +On a Debian GNU/Linux system, the GPL license version 2 is included in the file +/usr/share/common-licenses/GPL-2. Modified: trunk/packages/R/r-other-mott-happy/trunk/debian/rules =================================================================== --- trunk/packages/R/r-cran-combinat/trunk/debian/rules 2009-05-13 07:47:49 UTC (rev 3377) +++ trunk/packages/R/r-other-mott-happy/trunk/debian/rules 2009-05-22 21:34:13 UTC (rev 3413) @@ -1,6 +1,4 @@ #!/usr/bin/make -f # -*- makefile -*- -# debian/rules file for the Debian/GNU Linux r-cran-qtl package -# Copyright 2003-2006 by Dirk Eddelbuettel <[email protected]> - +debRreposname=other-mott include /usr/share/R/debian/r-cran.mk Deleted: trunk/packages/R/r-other-mott-happy/trunk/debian/watch =================================================================== --- trunk/packages/R/r-cran-combinat/trunk/debian/watch 2009-05-13 07:47:49 UTC (rev 3377) +++ trunk/packages/R/r-other-mott-happy/trunk/debian/watch 2009-05-22 21:34:13 UTC (rev 3413) @@ -1,3 +0,0 @@ -version=3 -http://cran.r-project.org/src/contrib/combinat_([-0-9\.]*)\.tar\.gz - _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
