Author: smoe-guest
Date: 2009-06-21 19:45:32 +0000 (Sun, 21 Jun 2009)
New Revision: 3517
Added:
trunk/packages/autodocksuite/trunk/debian/autodock-test.dirs
trunk/packages/autodocksuite/trunk/debian/autogrid-test.dirs
trunk/packages/autodocksuite/trunk/debian/patches/errorMessages.patch
Modified:
trunk/packages/autodocksuite/trunk/debian/changelog
trunk/packages/autodocksuite/trunk/debian/control
trunk/packages/autodocksuite/trunk/debian/patches/series
trunk/packages/autodocksuite/trunk/debian/rules
Log:
Updates for 4.2.1
Added: trunk/packages/autodocksuite/trunk/debian/autodock-test.dirs
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/autodock-test.dirs
(rev 0)
+++ trunk/packages/autodocksuite/trunk/debian/autodock-test.dirs
2009-06-21 19:45:32 UTC (rev 3517)
@@ -0,0 +1 @@
+usr/share/autodock
Added: trunk/packages/autodocksuite/trunk/debian/autogrid-test.dirs
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/autogrid-test.dirs
(rev 0)
+++ trunk/packages/autodocksuite/trunk/debian/autogrid-test.dirs
2009-06-21 19:45:32 UTC (rev 3517)
@@ -0,0 +1 @@
+usr/share/autogrid
Modified: trunk/packages/autodocksuite/trunk/debian/changelog
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/changelog 2009-06-21 16:02:52 UTC
(rev 3516)
+++ trunk/packages/autodocksuite/trunk/debian/changelog 2009-06-21 19:45:32 UTC
(rev 3517)
@@ -1,3 +1,13 @@
+autodocksuite (4.2.1-1) unstable; urgency=low
+
+ * new upstream release
+ * added gcc flag to suppress char* conversion warnings
+ * removed pointless DM-Maintainer-upload permission
+ * bumped Debian policy compliance to 3.8.2 - no changes required
+ * using new dh_prep instead of dh_clean -k, dependency on debhelper > 7
+
+ -- Steffen Moeller <[email protected]> Sun, 21 Jun 2009 21:41:07 +0200
+
autodocksuite (4.0.1-5) UNRELEASED; urgency=low
* debian/control:
Modified: trunk/packages/autodocksuite/trunk/debian/control
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/control 2009-06-21 16:02:52 UTC
(rev 3516)
+++ trunk/packages/autodocksuite/trunk/debian/control 2009-06-21 19:45:32 UTC
(rev 3517)
@@ -3,11 +3,10 @@
Priority: optional
Maintainer: Debian-Med Packaging Team
<[email protected]>
Uploaders: Steffen Moeller <[email protected]>, Charles Plessy
<[email protected]>
-Build-Depends: debhelper (>= 5), quilt
-Standards-Version: 3.8.0
+Build-Depends: debhelper (>= 7), quilt
+Standards-Version: 3.8.2
Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/autodocksuite/trunk/?rev=0&sc=0
Vcs-Svn:
svn://svn.debian.org/svn/debian-med/trunk/packages/autodocksuite/trunk/
-DM-Upload-Allowed: yes
Homepage: http://autodock.scripps.edu/
Package: autodock
Added: trunk/packages/autodocksuite/trunk/debian/patches/errorMessages.patch
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/patches/errorMessages.patch
(rev 0)
+++ trunk/packages/autodocksuite/trunk/debian/patches/errorMessages.patch
2009-06-21 19:45:32 UTC (rev 3517)
@@ -0,0 +1,20 @@
+--- a/src/autogrid/Makefile.am 2009-06-21 21:17:31.942562100 +0200
++++ b/src/autogrid/Makefile.am 2009-06-21 21:18:23.862532470 +0200
+@@ -90,6 +90,7 @@
+ AM_CFLAGS = -Wall -O3 # All warnings, Agressive optimization
+
+ AM_CPPFLAGS = -Wall -O3 -I$(srcdir)/../autodock # All warnings, Agressive
optimization
++AM_CPPFLAGS += -Wno-write-strings # increase compatibility pre 4.x compilers
for string handling
+
+ # autogrid4_CXXFLAGS = -Wall -O3 -ftree-vectorize # All warnings, Agressive
optimization, GCC vectorization in Mac OS X
+
+--- a/src/autodock/Makefile.am 2009-06-21 21:22:14.411518881 +0200
++++ b/src/autodock/Makefile.am 2009-06-21 21:22:31.103575546 +0200
+@@ -244,6 +244,7 @@
+
+ # if gnu c++ compiler
+ AM_CXXFLAGS += -Wall # All warnings
++AM_CXXFLAGS += -Wno-write-strings # increase compatibility pre 4.x compilers
for string handling
+
+ #AM_CXXFLAGS = -Wall -O3 # All warnings, Agressive optimization
+ #AM_CXXFLAGS = -Wall -O3 -ftree-vectorize # All warnings, Agressive
optimization + GCC vectorization # MacOSX only?
Modified: trunk/packages/autodocksuite/trunk/debian/patches/series
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/patches/series 2009-06-21
16:02:52 UTC (rev 3516)
+++ trunk/packages/autodocksuite/trunk/debian/patches/series 2009-06-21
19:45:32 UTC (rev 3517)
@@ -1,2 +1,3 @@
+errorMessages.patch
addHelp.patch
gcc43-compatibility.patch
Modified: trunk/packages/autodocksuite/trunk/debian/rules
===================================================================
--- trunk/packages/autodocksuite/trunk/debian/rules 2009-06-21 16:02:52 UTC
(rev 3516)
+++ trunk/packages/autodocksuite/trunk/debian/rules 2009-06-21 19:45:32 UTC
(rev 3517)
@@ -1,14 +1,4 @@
#!/usr/bin/make -f
-# -*- makefile -*-
-# Sample debian/rules that uses debhelper.
-#
-# This file was originally written by Joey Hess and Craig Small.
-# As a special exception, when this file is copied by dh-make into a
-# dh-make output file, you may use that output file without restriction.
-# This special exception was added by Craig Small in version 0.37 of dh-make.
-#
-# Modified to make a template file for a multi-binary package with separated
-# build-arch and build-indep targets by Bill Allombert 2001
# Uncomment this to turn on verbose mode.
#export DH_VERBOSE=1
@@ -30,26 +20,24 @@
configure-stamp: $(QUILT_STAMPFN)
dh_testdir
# Add here commands to configure the package.
- for d in autodock autogrid; do \
- (cd src/$$d && ./configure CFLAGS="$(CFLAGS)" --prefix=/usr) ; \
+ for d in src/autogrid src/autodock; do \
+ ( cd $$d && autoreconf -i && ./configure CFLAGS="$(CFLAGS)"
--prefix=/usr ) \
done
touch configure-stamp
-
#Architecture
build: build-arch build-indep
build-arch: build-arch-stamp
build-arch-stamp: configure-stamp
# Add here commands to compile the arch part of the package.
- for d in src/autodock src/autogrid; do $(MAKE) -C $$d; done
+ for d in src/autogrid src/autodock; do $(MAKE) -C $$d; done
touch $@
build-indep: build-indep-stamp
build-indep-stamp: configure-stamp
# Add here commands to compile the indep part of the package.
- #$(MAKE) doc
touch $@
clean: unpatch
@@ -68,17 +56,19 @@
install-indep:
dh_testdir
dh_testroot
- dh_clean -k -i
+ dh_prep -i
dh_installdirs -i
dh_install -i
- rm -r
$(CURDIR)/debian/autodock-test/usr/share/autodock/Tests/AutoDockTools
+ rm -rf
$(CURDIR)/debian/autodock-test/usr/share/autodock/Tests/AutoDockTools
+ rm -rf $(CURDIR)/debian/autogrid-test/usr/share/autogrid/Tests/CVS/
+ rm -rf $(CURDIR)/debian/autodock-test/usr/share/autodock/Tests/CVS/
chmod 644 $(CURDIR)/debian/autodock-test/usr/share/autodock/Tests/*
chmod 644 $(CURDIR)/debian/autogrid-test/usr/share/autogrid/Tests/*
install-arch:
dh_testdir
dh_testroot
- dh_clean -k -s
+ dh_prep -s
dh_installdirs -s
# Add here commands to install the arch part of the package into
@@ -88,8 +78,9 @@
$(MAKE) -C src/$$d DESTDIR=$(CURDIR)/debian/$$d install; \
done
dh_install -s
- dh_installchangelogs -pautodock src/autodock/ChangeLog
- dh_installchangelogs -pautogrid src/autogrid/ChangeLog
+ # The changelogs are non-informative
+ #dh_installchangelogs -pautodock src/autodock/ChangeLog
+ #dh_installchangelogs -pautogrid src/autogrid/ChangeLog
# Must not depend on anything. This is to be called by
# binary-arch/binary-indep
@@ -120,6 +111,6 @@
binary-arch: build-arch install-arch
$(MAKE) -f debian/rules DH_OPTIONS=-s binary-common
-#binary-indep
binary: binary-arch binary-indep
+
.PHONY: build clean binary-indep binary-arch binary install install-indep
install-arch configure
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