Author: plessy
Date: 2009-06-23 05:20:43 +0000 (Tue, 23 Jun 2009)
New Revision: 3527
Modified:
trunk/packages/ssake/trunk/debian/changelog
trunk/packages/ssake/trunk/debian/control
trunk/packages/ssake/trunk/debian/copyright
Log:
New upstream release.
* debian/control:
- Incremented Standards-Version to indicate conformance with Policy 3.8.2.
(No changes needed.)
- Using the Unicode ?\226?\128?\152prime?\226?\128?\153 character for the
3?\226?\128?\178 direction (cosmetic).
* Simplified debian/copyright according to latest discussions about the
machine-readable format.
Modified: trunk/packages/ssake/trunk/debian/changelog
===================================================================
--- trunk/packages/ssake/trunk/debian/changelog 2009-06-22 18:25:50 UTC (rev
3526)
+++ trunk/packages/ssake/trunk/debian/changelog 2009-06-23 05:20:43 UTC (rev
3527)
@@ -1,3 +1,21 @@
+ssake (3.4-1) unstable; urgency=low
+
+ * New upstream release.
+ - Fixed a bug in PET routine. User can now track read position and
+ individual base coverage for reads *fully embedded* within contigs,
+ using the -c option.
+ - Version 3.4 exploits paired-end reads to explore possible contig merges
+ within scaffolds (Consecutive contigs >= -z bases must overlap by -m
+ bases or more).
+ * debian/control:
+ - Incremented Standards-Version to indicate conformance with Policy 3.8.2.
+ (No changes needed.)
+ - Using the Unicode ‘prime’ character for the 3′ direction (cosmetic).
+ * Simplified debian/copyright according to latest discussions about the
+ machine-readable format.
+
+ -- Charles Plessy <[email protected]> Tue, 23 Jun 2009 13:58:49 +0900
+
ssake (3.2.1-2) unstable; urgency=low
* debian/control:
Modified: trunk/packages/ssake/trunk/debian/control
===================================================================
--- trunk/packages/ssake/trunk/debian/control 2009-06-22 18:25:50 UTC (rev
3526)
+++ trunk/packages/ssake/trunk/debian/control 2009-06-23 05:20:43 UTC (rev
3527)
@@ -6,7 +6,7 @@
Uploaders: Andreas Tille <[email protected]>,
Charles Plessy <[email protected]>
Build-Depends: cdbs, debhelper (>= 7)
-Standards-Version: 3.8.0
+Standards-Version: 3.8.2
Homepage: http://www.bcgsc.ca/platform/bioinfo/software/ssake
Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/ssake/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/ssake/trunk/
@@ -16,10 +16,10 @@
Depends: ${misc:Depends}, ${perl:Depends}, python
Suggests: ssake-examples
Description: genomics application for assembling millions of very short DNA
sequences
- The Short Sequence Assembly by K-mer search and 3' read Extension
+ The Short Sequence Assembly by K-mer search and 3′ read Extension
(SSAKE) is a genomics application for aggressively assembling
millions of short nucleotide sequences by progressively searching for
- perfect 3'-most k-mers using a DNA prefix tree. SSAKE is designed to
+ perfect 3′-most k-mers using a DNA prefix tree. SSAKE is designed to
help leverage the information from short sequences reads by
stringently clustering them into contigs that can be used to
characterize novel sequencing targets.
Modified: trunk/packages/ssake/trunk/debian/copyright
===================================================================
--- trunk/packages/ssake/trunk/debian/copyright 2009-06-22 18:25:50 UTC (rev
3526)
+++ trunk/packages/ssake/trunk/debian/copyright 2009-06-23 05:20:43 UTC (rev
3527)
@@ -1,12 +1,11 @@
-Format-Specification: http://wiki.debian.org/Proposals/CopyrightFormat
-Upstream-Author: Rene Warren <[email protected]>
-Packaged-By: Andreas Tille <[email protected]>
-Packaged-Date: Mon, 24 Nov 2008 13:12:38 +0100
-Upstream-Source:
http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.2.1/ssake_v3-2-1-tar.gz
+Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’.
-Files: *
+Name: SSAKE
+Contact: Rene Warren <[email protected]>
+Source:
http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.4/ssake_v3-4-tar.gz
+
+Copyright: © 2006-2008 Rene Warren <[email protected]>
License: GPL-2+
-Copyright: © 2006-2008 Rene Warren <[email protected]>
This program is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 2 of the License, or
@@ -19,11 +18,12 @@
.
You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
-X-Comment: On Debian systems, the complete text of the GNU Public
- License can be found in `/usr/share/common-licenses/GPL-2'.
+On Debian systems, the complete text of the GNU Public License version 2 can be
+found in ‘/usr/share/common-licenses/GPL-2’.
+
Files: debian/*
Copyright: © 2008 Andreas Tille <[email protected]>
© 2009 Charles Plessy <[email protected]>
-License: Same as Ssake itelf
+License: Same as SSAKE itelf
(see above)
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