Author: naoliv Date: 2009-06-25 18:16:34 +0000 (Thu, 25 Jun 2009) New Revision: 3551
Modified: trunk/packages/autodocksuite/trunk/debian/autodock4.1 trunk/packages/autodocksuite/trunk/debian/autogrid4.1 trunk/packages/autodocksuite/trunk/debian/changelog trunk/packages/autodocksuite/trunk/debian/control trunk/packages/autodocksuite/trunk/debian/copyright Log: - Fix #534267 and #534601 - Add watch file - Fix lintian's copyright-with-old-dh-make-debian-copyright and hyphen-used-as-minus-sign Modified: trunk/packages/autodocksuite/trunk/debian/autodock4.1 =================================================================== --- trunk/packages/autodocksuite/trunk/debian/autodock4.1 2009-06-25 17:43:44 UTC (rev 3550) +++ trunk/packages/autodocksuite/trunk/debian/autodock4.1 2009-06-25 18:16:34 UTC (rev 3551) @@ -64,7 +64,7 @@ .br gunzip *.map.gz .br -autodock4 -p 1pgp.dpf -l /tmp/1pgp.dlg +autodock4 \-p 1pgp.dpf \-l /tmp/1pgp.dlg The interpretation of results is aided by the AutoDockTools suite. Please also inspect the tutorials offered online. Modified: trunk/packages/autodocksuite/trunk/debian/autogrid4.1 =================================================================== --- trunk/packages/autodocksuite/trunk/debian/autogrid4.1 2009-06-25 17:43:44 UTC (rev 3550) +++ trunk/packages/autodocksuite/trunk/debian/autogrid4.1 2009-06-25 18:16:34 UTC (rev 3551) @@ -17,7 +17,7 @@ .SH SYNOPSIS .B autogrid4 .RI [ options ] --p +\-p .RI gridparameterfile .SH DESCRIPTION .B AutoGrid @@ -74,12 +74,12 @@ .br $ cd /tmp .br -$ ln -s $D/AD4_parameters.dat . +$ ln \-s $D/AD4_parameters.dat . .br -$ gunzip -c $D/hsg1_sm.pdbqt.gz > hsg1_sm.pdbqt +$ gunzip \-c $D/hsg1_sm.pdbqt.gz > hsg1_sm.pdbqt .br .nh -$ autogrid4 -p $D/hsg1_no_receptor_types.gpf -l hsg1_no_receptor_types.glg +$ autogrid4 \-p $D/hsg1_no_receptor_types.gpf \-l hsg1_no_receptor_types.glg .ad b .TP This command prepares grid map files for each of the AutoDock atom types specified in the grid parameter file (in this case: hsg1_sm.A.map, hsg1_sm.C.map, hsg1_sm.d.map, hsg1_sm.e.map, hsg1_sm.HD.map, hsg1_sm.NA.map, hsg1_sm.N.map, hsg1_sm.OA.map), the AVS field file (hsg1_sm.maps.fld) and hsg1_sm.maps.xyz. To perform the cocking calculation, AutoDock should be executed, though it demands a separate docking parameter file (with extension .dpf). The 'DPF' refers to the grid map files that are necessary to the docking and allows the setting of other important parameters, such as the search method and how many dockings to perform. Modified: trunk/packages/autodocksuite/trunk/debian/changelog =================================================================== --- trunk/packages/autodocksuite/trunk/debian/changelog 2009-06-25 17:43:44 UTC (rev 3550) +++ trunk/packages/autodocksuite/trunk/debian/changelog 2009-06-25 18:16:34 UTC (rev 3551) @@ -1,3 +1,13 @@ +autodocksuite (4.2.1+rc1-2) unstable; urgency=low + + * Fix FTBFS (Closes: #534601) + - debian/control: add automake and csh in Build-Depends + # Downgraded autodocktools from Recommends to Suggests (Closes: #534267) + * Add watch file + * Include myself in Uploaders. + + -- Nelson A. de Oliveira <[email protected]> Thu, 25 Jun 2009 14:43:54 -0300 + autodocksuite (4.2.1+rc1-1) unstable; urgency=low * new upstream release Modified: trunk/packages/autodocksuite/trunk/debian/control =================================================================== --- trunk/packages/autodocksuite/trunk/debian/control 2009-06-25 17:43:44 UTC (rev 3550) +++ trunk/packages/autodocksuite/trunk/debian/control 2009-06-25 18:16:34 UTC (rev 3551) @@ -2,8 +2,8 @@ Section: science Priority: optional Maintainer: Debian-Med Packaging Team <[email protected]> -Uploaders: Steffen Moeller <[email protected]>, Charles Plessy <[email protected]> -Build-Depends: debhelper (>= 7), quilt +Uploaders: Steffen Moeller <[email protected]>, Charles Plessy <[email protected]>, Nelson A. de Oliveira <[email protected]> +Build-Depends: debhelper (>= 7), quilt, automake, csh Standards-Version: 3.8.2 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/autodocksuite/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/autodocksuite/trunk/ @@ -27,8 +27,7 @@ Package: autogrid Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} -Recommends: autodocktools -Suggests: autodock +Suggests: autodock, autodocktools Description: pre-calculate binding of ligands to their receptor The AutoDockSuite addresses the molecular analysis of the docking of a smaller chemical compounds to their receptors of known three-dimensional @@ -42,11 +41,11 @@ Package: autodock-test Architecture: all Suggests: autodock -Description: Test files for AutoDock +Description: test files for AutoDock This package contain the test files for the AutoDock program. Package: autogrid-test Architecture: all Suggests: autogrid -Description: Test files for AutoGrid +Description: test files for AutoGrid This package contain the test files for the AutoGrid program. Modified: trunk/packages/autodocksuite/trunk/debian/copyright =================================================================== --- trunk/packages/autodocksuite/trunk/debian/copyright 2009-06-25 17:43:44 UTC (rev 3550) +++ trunk/packages/autodocksuite/trunk/debian/copyright 2009-06-25 18:16:34 UTC (rev 3551) @@ -23,7 +23,7 @@ Copyright: - Copyright (C) 1989-2008, All Rights Reserved. + Copyright © 1989-2008, All Rights Reserved. Garrett M. Morris <[email protected]> David S. Goodsell <[email protected]> Scott Halliday @@ -58,5 +58,5 @@ On Debian systems, the complete text of the GNU General Public License can be found in `/usr/share/common-licenses/GPL'. -The Debian packaging is (C) 2007, Steffen Moeller <[email protected]> and +The Debian packaging is © 2007, Steffen Moeller <[email protected]> and is licensed under the GPL, see above. _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
