Author: plessy Date: 2009-06-27 03:38:05 +0000 (Sat, 27 Jun 2009) New Revision: 3565
Modified: trunk/packages/velvet/trunk/debian/changelog trunk/packages/velvet/trunk/debian/copyright trunk/packages/velvet/trunk/debian/rules Log: New upstream release. - Small formatting change to error messages - K > 31 now possible - --help option corrected for velvetg - Acceleration of k-mer operations (comparable to 64bit int performance) - Fixed variable lengths - Reordered struct declaration for more efficent memory alignment * debian/rules: - Restored manpage generation for velvetg*. - Added forgotten CFLAGS for the colorspace building. Modified: trunk/packages/velvet/trunk/debian/changelog =================================================================== --- trunk/packages/velvet/trunk/debian/changelog 2009-06-26 20:55:49 UTC (rev 3564) +++ trunk/packages/velvet/trunk/debian/changelog 2009-06-27 03:38:05 UTC (rev 3565) @@ -1,3 +1,18 @@ +velvet (0.7.37-1) unstable; urgency=low + + * New upstream release. + - Small formatting change to error messages + - K > 31 now possible + - --help option corrected for velvetg + - Acceleration of k-mer operations (comparable to 64bit int performance) + - Fixed variable lengths + - Reordered struct declaration for more efficent memory alignment + * debian/rules: + - Restored manpage generation for velvetg*. + - Added forgotten CFLAGS for the colorspace building. + + -- Charles Plessy <[email protected]> Sat, 27 Jun 2009 12:27:27 +0900 + velvet (0.7.34-1) unstable; urgency=low * New upstream release correcting multiple bugs, changing the stats output, Modified: trunk/packages/velvet/trunk/debian/copyright =================================================================== --- trunk/packages/velvet/trunk/debian/copyright 2009-06-26 20:55:49 UTC (rev 3564) +++ trunk/packages/velvet/trunk/debian/copyright 2009-06-27 03:38:05 UTC (rev 3565) @@ -1,14 +1,13 @@ -Format: Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’. +Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’. + Name: Velvet Contact: Daniel Zerbino <[email protected]> -Source: http://www.ebi.ac.uk/~zerbino/velvet/velvet_0.7.34.tgz +Source: http://www.ebi.ac.uk/~zerbino/velvet/velvet_0.7.37.tgz Copyright: © 2006-2009 Daniel Zerbino <[email protected]> © 2000-2005 Guy St.C. Slater <[email protected]> © 2009 John Marshall ([email protected]) License: GPL-2+ - This file is part of Velvet. - . Velvet is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or @@ -22,9 +21,10 @@ You should have received a copy of the GNU General Public License along with Velvet; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA -Comment: On Debian systems, the complete text of the GNU General Public - License version 2 can be found in ‘/usr/share/common-licenses/GPL-2’. +On Debian systems, the complete text of the GNU General Public +License version 2 can be found in ‘/usr/share/common-licenses/GPL-2’. + Files: velvet_0.7.34/src/fibpriv.h velvet_0.7.34/src/dfib.c velvet_0.7.34/src/fib.h @@ -79,6 +79,7 @@ License: GPL-2+ Files: /third-party/z-lib-1.2.3 +Name: zlib Copyright: © 1995-1998 Jean-loup Gailly and Mark Adler License: This software is provided 'as-is', without any express or implied Modified: trunk/packages/velvet/trunk/debian/rules =================================================================== --- trunk/packages/velvet/trunk/debian/rules 2009-06-26 20:55:49 UTC (rev 3564) +++ trunk/packages/velvet/trunk/debian/rules 2009-06-27 03:38:05 UTC (rev 3565) @@ -11,15 +11,15 @@ DEB_MAKE_BUILD_TARGET = obj velveth velvetg Z_LIB_FILES='' LDFLAGS='-lm -lz' OPT='' Z_LIB_INC='/usr/include' build/velvet:: - make color Z_LIB_FILES='' LDFLAGS='-lm -lz' OPT='' Z_LIB_INC='/usr/include' + make color CFLAGS='$(CFLAGS)' Z_LIB_FILES='' LDFLAGS='-lm -lz' OPT='' Z_LIB_INC='/usr/include' mkdir -p $(CURDIR)/debian/$(pkg)/usr/share/man/man1/ help2man --no-info --name="simple hashing program" \ $(CURDIR)/velveth > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velveth.1 help2man --no-info --name="simple hashing program (colorspace version)" \ $(CURDIR)/velveth_de > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velveth_de.1 -# help2man --no-info --version-option=" " \ -# --name="de Bruijn graph construction, error removal and repeat resolution" \ -# $(CURDIR)/velvetg > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velvetg.1 -# help2man --no-info --version-option=" " \ -# --name="de Bruijn graph construction, error removal and repeat resolution (colorspace version)" \ -# $(CURDIR)/velvetg_de > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velvetg_de.1 + help2man --no-info --version-option=" " \ + --name="de Bruijn graph construction, error removal and repeat resolution" \ + $(CURDIR)/velvetg > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velvetg.1 + help2man --no-info --version-option=" " \ + --name="de Bruijn graph construction, error removal and repeat resolution (colorspace version)" \ + $(CURDIR)/velvetg_de > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/velvetg_de.1 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
