Author: plessy
Date: 2009-07-07 02:02:15 +0000 (Tue, 07 Jul 2009)
New Revision: 3588
Added:
trunk/packages/libace-perl/trunk/debian/docs
trunk/packages/libace-perl/trunk/debian/examples
trunk/packages/libace-perl/trunk/debian/reference
Modified:
trunk/packages/libace-perl/trunk/debian/changelog
trunk/packages/libace-perl/trunk/debian/control
trunk/packages/libace-perl/trunk/debian/copyright
trunk/packages/libace-perl/trunk/debian/rules
Log:
Preparation of a QA upload fixing bashism.
TODO: correct dupplication ace/ace.pl in /usr/bin.
* debian/rules
- Replaced an echo command by the Perl equivalent in debian/rules
(Closes: #535390).
- Use dh clean and binary-arch, and created debian/docs and
debian/examples.
* debian/control:
- Added links to the Subversion repository where libace-perl is.
- Incremented Standards-Version to reflect conformance with
Policy 3.8.2 (no changes needed).
- Made the Debian Med packaging team the maintainer.
- Dropped the build dependency on Perl.
* Updated debian/copyright to my latest exploration of a possible
machine-readable format.
* Added bibliographic information in BibTeX format in debian/reference.
Modified: trunk/packages/libace-perl/trunk/debian/changelog
===================================================================
--- trunk/packages/libace-perl/trunk/debian/changelog 2009-07-06 17:30:37 UTC
(rev 3587)
+++ trunk/packages/libace-perl/trunk/debian/changelog 2009-07-07 02:02:15 UTC
(rev 3588)
@@ -1,3 +1,24 @@
+libace-perl (1.92-2) UNRELEASED; urgency=low
+
+ TODO: correct dupplication ace/ace.pl in /usr/bin.
+
+ * debian/rules
+ - Replaced an echo command by the Perl equivalent in debian/rules
+ (Closes: #535390).
+ - Use dh clean and binary-arch, and created debian/docs and
+ debian/examples.
+ * debian/control:
+ - Added links to the Subversion repository where libace-perl is.
+ - Incremented Standards-Version to reflect conformance with
+ Policy 3.8.2 (no changes needed).
+ - Made the Debian Med packaging team the maintainer.
+ - Dropped the build dependency on Perl.
+ * Updated debian/copyright to my latest exploration of a possible
+ machine-readable format.
+ * Added bibliographic information in BibTeX format in debian/reference.
+
+ -- Charles Plessy <[email protected]> Tue, 07 Jul 2009 09:32:15 +0900
+
libace-perl (1.92-1) unstable; urgency=low
* Initial Release (Closes: #468760).
Modified: trunk/packages/libace-perl/trunk/debian/control
===================================================================
--- trunk/packages/libace-perl/trunk/debian/control 2009-07-06 17:30:37 UTC
(rev 3587)
+++ trunk/packages/libace-perl/trunk/debian/control 2009-07-07 02:02:15 UTC
(rev 3588)
@@ -1,9 +1,13 @@
Source: libace-perl
Section: perl
Priority: optional
-Build-Depends: debhelper (>= 7), perl (>= 5.6.10-12)
-Maintainer: Charles Plessy <[email protected]>
-Standards-Version: 3.8.0
+Build-Depends: debhelper (>= 7)
+Maintainer: Debian Med Packaging Team
<[email protected]>
+DM-Upload-Allowed: yes
+Uploaders: Charles Plessy <[email protected]>
+Standards-Version: 3.8.2
+Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/libace-perl/trunk/?rev=0&sc=0
+Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/libace-perl/trunk/
Homepage: http://search.cpan.org/dist/AcePerl/
Package: libace-perl
Modified: trunk/packages/libace-perl/trunk/debian/copyright
===================================================================
--- trunk/packages/libace-perl/trunk/debian/copyright 2009-07-06 17:30:37 UTC
(rev 3587)
+++ trunk/packages/libace-perl/trunk/debian/copyright 2009-07-07 02:02:15 UTC
(rev 3588)
@@ -1,52 +1,50 @@
-Format-Specification:
http://wiki.debian.org/Proposals/CopyrightFormat?action=recall&rev=322
-Upstream-Name:AcePerl
-Upstream-Maintainer: Lincoln Stein <[email protected]>
-Upstream-Source:
http://search.cpan.org/CPAN/authors/id/L/LD/LDS/AcePerl-1.92.tar.gz
-X-Packaged-By: Charles Plessy <[email protected]>
-X-Packaged-Date: Mon, 10 Nov 2008 14:18:23 +0900
+Machine-readable license summary for AcePerl, see
‘http://dep.debian.net/deps/dep5/’.
-Files: *
+Name : AcePerl
+Contact : Lincoln Stein <[email protected]>
+Source : http://search.cpan.org/CPAN/authors/id/L/LD/LDS/AcePerl-1.92.tar.gz
+
Copyright: © 1998 Cold Spring Harbor Laboratory
-License: GPL-1+ | Artistic
- This library is free software; you can redistribute it and/or modify
- it under the same terms as Perl itself. See the Artistic License file
- in the main Perl distribution for specific terms and conditions of
- use. In addition, the following disclaimers apply:
- .
- CSHL makes no representations whatsoever as to the SOFTWARE contained
- herein. It is experimental in nature and is provided WITHOUT WARRANTY
- OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER
- WARRANTY, EXPRESS OR IMPLIED. CSHL MAKES NO REPRESENTATION OR
- WARRANTY THAT THE USE OF THIS SOFTWARE WILL NOT INFRINGE ANY PATENT OR
- OTHER PROPRIETARY RIGHT.
- .
- By downloading this SOFTWARE, your Institution hereby indemnifies CSHL
- against any loss, claim, damage or liability, of whatsoever kind or
- nature, which may arise from your Institution's respective use,
- handling or storage of the SOFTWARE.
- .
- If publications result from research using this SOFTWARE, we ask that
- CSHL be acknowledged and/or credit be given to CSHL scientists, as
- scientifically appropriate.
-X-Comment: On Debian systems, the complete text of the GNU General
- Public License can be found in `/usr/share/common-licenses/GPL'.
-X-Comment: On Debian systems, the complete text of the Artistic
- license can be found in `/usr/share/common-licenses/Artistic'.
+License: Perl
+
+ This library is free software; you can redistribute it and/or modify
+ it under the same terms as Perl itself. See the Artistic License file
+ in the main Perl distribution for specific terms and conditions of
+ use. In addition, the following disclaimers apply:
+
+ CSHL makes no representations whatsoever as to the SOFTWARE contained
+ herein. It is experimental in nature and is provided WITHOUT WARRANTY
+ OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER
+ WARRANTY, EXPRESS OR IMPLIED. CSHL MAKES NO REPRESENTATION OR
+ WARRANTY THAT THE USE OF THIS SOFTWARE WILL NOT INFRINGE ANY PATENT OR
+ OTHER PROPRIETARY RIGHT.
+
+ By downloading this SOFTWARE, your Institution hereby indemnifies CSHL
+ against any loss, claim, damage or liability, of whatsoever kind or
+ nature, which may arise from your Institution's respective use,
+ handling or storage of the SOFTWARE.
+
+ If publications result from research using this SOFTWARE, we ask that
+ CSHL be acknowledged and/or credit be given to CSHL scientists, as
+ scientifically appropriate.
-Files: Ace/Model.pm, Ace/Object.pm, Ace/Local.pm, Ace/Sequence/Multi.pm,
Ace/Sequence/Homol.pm, Ace/Sequence/GappedAlignment.pm,
Ace/Sequence/FeatureList.pm, Ace/Sequence/Feature.pm, Ace/Sequence/Gene.pm,
Ace/Sequence/Transcript.pm, Ace/Sequence.pm
+On Debian systems, the complete text of the latest version of the GNU General
+Public License can be found in ‘/usr/share/common-licenses/GPL’, and the
+complete text of the Artistic license can be found in
+‘/usr/share/common-licenses/Artistic’.
+
+Files: Ace/Model.pm Ace/Object.pm Ace/Local.pm Ace/Sequence/Multi.pm
+ Ace/Sequence/Homol.pm Ace/Sequence/GappedAlignment.pm
Ace/Sequence/FeatureList.pm
+ Ace/Sequence/Feature.pm Ace/Sequence/Gene.pm Ace/Sequence/Transcript.pm
Ace/Sequence.pm
Copyright: © 1997-1999 Lincoln D. Stein
-License: GPL-1+ | Artistic
+License: Perl
(see above)
-Files: debian/*
-Copyright: © 2008 Charles Plessy <[email protected]>
-License: same terms as the software itself (see above).
-
Files: acelib/*
Copyright: © 1991-1998 J Thierry-Mieg and R Durbin
License: Probably a mixture of GPL-2+ and LGPL-2+
This file is part of the ACEDB genome database package, written by
Richard Durbin (Sanger Centre, UK) [email protected], and
Jean Thierry-Mieg (CRBM du CNRS, France) [email protected]
-X-Comment: These files can be found licenced either as GPL-2+ or LGPL-2+
+Comment: These files can be found licensed either as GPL-2+ or LGPL-2+
in ftp://ftp.sanger.ac.uk/pub/acedb/SUPPORTED/ACEDB-source.4.9.39.tar.gz
Added: trunk/packages/libace-perl/trunk/debian/docs
===================================================================
--- trunk/packages/libace-perl/trunk/debian/docs
(rev 0)
+++ trunk/packages/libace-perl/trunk/debian/docs 2009-07-07 02:02:15 UTC
(rev 3588)
@@ -0,0 +1,4 @@
+README
+README.ACEBROWSER
+docs/README
+examples/README
Added: trunk/packages/libace-perl/trunk/debian/examples
===================================================================
--- trunk/packages/libace-perl/trunk/debian/examples
(rev 0)
+++ trunk/packages/libace-perl/trunk/debian/examples 2009-07-07 02:02:15 UTC
(rev 3588)
@@ -0,0 +1 @@
+examples/*
Added: trunk/packages/libace-perl/trunk/debian/reference
===================================================================
--- trunk/packages/libace-perl/trunk/debian/reference
(rev 0)
+++ trunk/packages/libace-perl/trunk/debian/reference 2009-07-07 02:02:15 UTC
(rev 3588)
@@ -0,0 +1,12 @@
+...@article{lincoln D.Stein12011998,
+author = {Stein, Lincoln D. and Thierry-Mieg, Jean},
+title={{Scriptable Access to the Caenorhabditis elegans Genome Sequence and
Other ACEDB Databases}},
+journal = {Genome Research},
+volume = {8},
+number = {12},
+pages = {1308-1315},
+doi = {10.1101/gr.8.12.1308},
+year = {1998},
+URL = {http://genome.cshlp.org/content/8/12/1308.abstract},
+eprint = {http://genome.cshlp.org/content/8/12/1308.full.pdf+html}
+}
Modified: trunk/packages/libace-perl/trunk/debian/rules
===================================================================
--- trunk/packages/libace-perl/trunk/debian/rules 2009-07-06 17:30:37 UTC
(rev 3587)
+++ trunk/packages/libace-perl/trunk/debian/rules 2009-07-07 02:02:15 UTC
(rev 3588)
@@ -44,25 +44,23 @@
# Directory for the acebrowser CGI scripts (~username ok):
[/usr/local/apache/cgi-bin/ace]
# Directory does not exist. Shall I create it for you? [y]
# Directory for the acebrowser HTML files and images (~username ok):
[/usr/local/apache/htdocs/ace]
- echo -ne
"3\ny\n$(CURDIR)/debian/libace-perl/etc/libace-perl\ny\n$(CURDIR)/debian/libace-perl/usr/lib/cgi-bin\ny\n$(CURDIR)/debian/libace-perl/usr/share/libace-perl"
| $(PERL) Makefile.PL INSTALLDIRS=vendor
+ perl -e "print
qq(3\ny\n$(CURDIR)/debian/libace-perl/etc/libace-perl\ny\n$(CURDIR)/debian/libace-perl/usr/lib/cgi-bin\ny\n$(CURDIR)/debian/libace-perl/usr/share/libace-perl)"
| $(PERL) Makefile.PL INSTALLDIRS=vendor
$(MAKE) OPTIMIZE="$(CFLAGS)" LD_RUN_PATH=""
# Disabled as they need internet access.
# $(MAKE) test
touch $@
clean:
- dh_testdir
- dh_testroot
- dh_clean build-stamp install-stamp .docs Ace/Browser/LocalSiteDefs.pm
docs/Ace.html pod2htmd.tmp pod2htmi.tmp util/ace.pl util/install.pl
- $(RM) --recursive docs/Ace
- # Add commands to clean up after the build process here
[ ! -f Makefile ] || $(MAKE) realclean
+ $(RM) --recursive docs/Ace
+ dh_clean build-stamp install-stamp .docs Ace/Browser/LocalSiteDefs.pm
docs/Ace.html pod2htmd.tmp pod2htmi.tmp util/ace.pl util/install.pl
+ dh clean
install: install-stamp
install-stamp: build-stamp
dh_testdir
dh_testroot
- dh_clean -k
+ dh_prep
# Add commands to install the package into $(TMP)
$(MAKE) install DESTDIR=$(TMP) PREFIX=/usr
mv $(TMP)/usr/bin/ace.pl $(TMP)/usr/bin/ace
@@ -78,20 +76,7 @@
# Build architecture-dependent files here.
binary-arch: build install
- dh_testdir
- dh_testroot
- dh_installexamples examples/*
- dh_installdocs README README.ACEBROWSER docs/README examples/README
- dh_installchangelogs ChangeLog
- dh_shlibdeps
- dh_strip
- dh_perl
- dh_compress
- dh_fixperms
- dh_installdeb
- dh_gencontrol
- dh_md5sums
- dh_builddeb
+ dh binary-arch
binary: binary-indep binary-arch
.PHONY: build clean binary-indep binary-arch binary install
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