Author: smoe-guest Date: 2009-08-17 16:43:23 +0000 (Mon, 17 Aug 2009) New Revision: 3781
Added: trunk/packages/acedb/ trunk/packages/acedb/trunk/ trunk/packages/acedb/trunk/debian/ trunk/packages/acedb/trunk/debian/README.Debian trunk/packages/acedb/trunk/debian/acedb-other-belvu.install trunk/packages/acedb/trunk/debian/acedb-other-dotter.install trunk/packages/acedb/trunk/debian/acedb-other.install trunk/packages/acedb/trunk/debian/changelog trunk/packages/acedb/trunk/debian/compat trunk/packages/acedb/trunk/debian/control trunk/packages/acedb/trunk/debian/copyright trunk/packages/acedb/trunk/debian/dirs trunk/packages/acedb/trunk/debian/docs trunk/packages/acedb/trunk/debian/rules trunk/packages/acedb/trunk/debian/watch Log: Adding skeleton for acedb. Added: trunk/packages/acedb/trunk/debian/README.Debian =================================================================== --- trunk/packages/acedb/trunk/debian/README.Debian (rev 0) +++ trunk/packages/acedb/trunk/debian/README.Debian 2009-08-17 16:43:23 UTC (rev 3781) @@ -0,0 +1,13 @@ +acedb for Debian +---------------- + +To package ACEDB is a long term project that will grow with demands. + +The proper packaging, i.e. to reduce the size of the binaries in favour +of an increased acceptance of the distribution's alread shipped classical +libraries, will need a closer collaboration with upstream and/or a higher +personal investment. + +Whoever feels like it please go ahead. + + -- Steffen Moeller <[email protected]> Mon, 17 Aug 2009 14:39:57 +0200 Added: trunk/packages/acedb/trunk/debian/acedb-other-belvu.install =================================================================== --- trunk/packages/acedb/trunk/debian/acedb-other-belvu.install (rev 0) +++ trunk/packages/acedb/trunk/debian/acedb-other-belvu.install 2009-08-17 16:43:23 UTC (rev 3781) @@ -0,0 +1 @@ +bin/belvu Added: trunk/packages/acedb/trunk/debian/acedb-other-dotter.install =================================================================== --- trunk/packages/acedb/trunk/debian/acedb-other-dotter.install (rev 0) +++ trunk/packages/acedb/trunk/debian/acedb-other-dotter.install 2009-08-17 16:43:23 UTC (rev 3781) @@ -0,0 +1 @@ +bin/dotter Added: trunk/packages/acedb/trunk/debian/acedb-other.install =================================================================== --- trunk/packages/acedb/trunk/debian/acedb-other.install (rev 0) +++ trunk/packages/acedb/trunk/debian/acedb-other.install 2009-08-17 16:43:23 UTC (rev 3781) @@ -0,0 +1 @@ +bin/efetch Added: trunk/packages/acedb/trunk/debian/changelog =================================================================== --- trunk/packages/acedb/trunk/debian/changelog (rev 0) +++ trunk/packages/acedb/trunk/debian/changelog 2009-08-17 16:43:23 UTC (rev 3781) @@ -0,0 +1,5 @@ +acedb (4.9.39-1) unstable; urgency=low + + * A first part of ACEDB is packaged - the belvu alignment editor. + + -- Steffen Moeller <[email protected]> Mon, 17 Aug 2009 14:39:57 +0200 Added: trunk/packages/acedb/trunk/debian/compat =================================================================== --- trunk/packages/acedb/trunk/debian/compat (rev 0) +++ trunk/packages/acedb/trunk/debian/compat 2009-08-17 16:43:23 UTC (rev 3781) @@ -0,0 +1 @@ +7 Added: trunk/packages/acedb/trunk/debian/control =================================================================== --- trunk/packages/acedb/trunk/debian/control (rev 0) +++ trunk/packages/acedb/trunk/debian/control 2009-08-17 16:43:23 UTC (rev 3781) @@ -0,0 +1,51 @@ +Source: acedb +Section: science +Priority: extra +Maintainer: Steffen Moeller <[email protected]> +Build-Depends: debhelper (>= 7), libreadline5-dev, libgtk2.0-dev +Standards-Version: 3.8.3 +Homepage: http://www.acedb.org/ + +Package: acedb-other-dotter +Provides: dotter +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: visualisation of sequence similarity + For the analysis of biological sequences, a general + principle is to corresponding regions between + related proteins, RNA or DNA. + . + Dotter displays graphically the similarity of + DNA or protein sequence to itself or another + sequence. + + +Package: acedb-other-belvu +Provides: belvu +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: multiple sequence alignment editor + For the analysis of biological sequences, a general + principle is to corresponding regions between + related proteins, RNA or DNA. Written next to + each other, corresponding positions above each + other, one has prepared an alignment. + . + Belvu is best known for its perfect implementation + of the Stockholm format of multiple sequence alignments, + since upstream is maintaining that. That is for + instance used in the Pfam and Rfam databases. + + +Package: acedb-other +Provides: efetch +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: retrieval of DNA or protein sequences + This package collects all those smallish applications + that acedb collects under its 'other' target of + its Makefile. + . + efetch: presumably short for 'entry fetch' collects + sequence information from common DNA and protein + databases. Added: trunk/packages/acedb/trunk/debian/copyright =================================================================== --- trunk/packages/acedb/trunk/debian/copyright (rev 0) +++ trunk/packages/acedb/trunk/debian/copyright 2009-08-17 16:43:23 UTC (rev 3781) @@ -0,0 +1,28 @@ +This package was debianized by Steffen Moeller <[email protected]> on +Mon, 17 Aug 2009 14:39:57 +0200. + +It was downloaded from <url://example.com> + +Upstream Author(s): + + <put author's name and email here> + <likewise for another author> + +Copyright: + + <Copyright (C) YYYY Name OfAuthor> + <likewise for another author> + +License: + + <Put the license of the package here indented by 4 spaces> + +The Debian packaging is: + + Copyright (C) 2009 Steffen Moeller <[email protected]> + +and is licensed under the GPL version 3, +see `/usr/share/common-licenses/GPL-3'. + +# Please also look if there are files or directories which have a +# different copyright/license attached and list them here. Added: trunk/packages/acedb/trunk/debian/dirs =================================================================== --- trunk/packages/acedb/trunk/debian/dirs (rev 0) +++ trunk/packages/acedb/trunk/debian/dirs 2009-08-17 16:43:23 UTC (rev 3781) @@ -0,0 +1,2 @@ +usr/bin +usr/sbin Added: trunk/packages/acedb/trunk/debian/rules =================================================================== --- trunk/packages/acedb/trunk/debian/rules (rev 0) +++ trunk/packages/acedb/trunk/debian/rules 2009-08-17 16:43:23 UTC (rev 3781) @@ -0,0 +1,87 @@ +#!/usr/bin/make -f +# -*- makefile -*- + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +# This has to be exported to make some magic below work. +export DH_OPTIONS + +#export ACEDB_MACHINE=LINUX_4 +export ACEDB_MACHINE=LINUX_64 + +configure-stamp: + ln -sf bin.$(ACEDB_MACHINE) bin + touch $@ + +#Architecture +build: build-arch build-indep + +build-arch: build-arch-stamp +build-arch-stamp: configure-stamp + + # Add here commands to compile the arch part of the package. + $(MAKE) tools other + touch $@ + +build-indep: build-indep-stamp +build-indep-stamp: configure-stamp + + # Add here commands to compile the indep part of the package. + #$(MAKE) doc + touch $@ + +clean: + dh_testdir + dh_testroot + rm -f build-arch-stamp build-indep-stamp configure-stamp + $(MAKE) clean + dh_clean bin + +install: install-indep install-arch +install-indep: + dh_testdir + dh_testroot + dh_prep -i + dh_installdirs -i + dh_install -i + +install-arch: + dh_testdir + dh_testroot + dh_prep -s + dh_installdirs -s + dh_install -s + +# Must not depend on anything. This is to be called by +# binary-arch/binary-indep +# in another 'make' thread. +binary-common: + dh_testdir + dh_testroot + dh_installchangelogs + dh_installdocs + dh_installexamples +# dh_installmenu + dh_installman + dh_link + dh_strip + dh_compress + dh_fixperms + dh_makeshlibs + dh_installdeb + dh_shlibdeps + dh_gencontrol + dh_md5sums + dh_builddeb + +# Build architecture independant packages using the common target. +binary-indep: build-indep install-indep + $(MAKE) -f debian/rules DH_OPTIONS=-i binary-common + +# Build architecture dependant packages using the common target. +binary-arch: build-arch install-arch + $(MAKE) -f debian/rules DH_OPTIONS=-s binary-common + +binary: binary-arch binary-indep +.PHONY: build clean binary-indep binary-arch binary install install-indep install-arch configure Property changes on: trunk/packages/acedb/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/acedb/trunk/debian/watch =================================================================== --- trunk/packages/acedb/trunk/debian/watch (rev 0) +++ trunk/packages/acedb/trunk/debian/watch 2009-08-17 16:43:23 UTC (rev 3781) @@ -0,0 +1,2 @@ +version=3 +fto://ftp://ftp.sanger.ac.uk/pub/acedb/SUPPORTED/ACEDB-source\.([0-9.])\.tar\.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
