Author: plessy
Date: 2009-09-03 02:04:06 +0000 (Thu, 03 Sep 2009)
New Revision: 3862
Modified:
trunk/packages/bioperl-run/trunk/debian/changelog
trunk/packages/bioperl-run/trunk/debian/control
trunk/packages/bioperl-run/trunk/debian/copyright
trunk/packages/bioperl-run/trunk/debian/rules
Log:
Disabled the tests for good, updated to latest Policy, and uploaded unpon user
request.
Modified: trunk/packages/bioperl-run/trunk/debian/changelog
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/changelog 2009-09-02 21:17:29 UTC
(rev 3861)
+++ trunk/packages/bioperl-run/trunk/debian/changelog 2009-09-03 02:04:06 UTC
(rev 3862)
@@ -1,7 +1,5 @@
-bioperl-run (1.6.1-1) UNRELEASED; urgency=low
+bioperl-run (1.6.1-1) unstable; urgency=low
- TODO reporducibly disable the tests…
-
* New upstream release.
* debian/patches/10-wrong-path-for-interpreter.patch: removed
(fixed upstream).
@@ -14,12 +12,12 @@
- Disabled tests as I experience failures with t/Eponine.t despite
this program is not installed.
* debian/copyright:
- - Removed vanity lines about debianization.
+ - Removed vanity lines about debianization and debian copyright.
- Incremented years to 2009.
- - Updated to latest version of the machine-readable format.
+ - Updated to latest experimentation of the machine-readable license
summary.
* debian/control:
- Incremented Standards-Version to reflect conformance on new Policy
- (no changes needed).
+ (dropped versionned build-dependancy on Perl).
- Removed build-dependancy on quilt (no patches anymore).
- Depend and Build-Depend on bioperl versions superior or equal to 1.6.0.
- Build-depends on, and Recommdnes libalgorithm-diff-perl, libipc-run-perl,
@@ -28,7 +26,7 @@
(otherwise tests fail).
- Depend on amap-align instead of amap (Closes: #541274).
- -- Charles Plessy <[email protected]> Sat, 11 Apr 2009 16:27:56 +0900
+ -- Charles Plessy <[email protected]> Thu, 03 Sep 2009 11:00:03 +0900
bioperl-run (1.5.2.100-1) unstable; urgency=low
Modified: trunk/packages/bioperl-run/trunk/debian/control
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/control 2009-09-02 21:17:29 UTC
(rev 3861)
+++ trunk/packages/bioperl-run/trunk/debian/control 2009-09-03 02:04:06 UTC
(rev 3862)
@@ -1,20 +1,20 @@
Source: bioperl-run
Section: science
Priority: optional
-Build-Depends: debhelper (>= 7), libmodule-build-perl
-Build-Depends-Indep: perl (>= 5.6.1), bioperl (>= 1.6.0),
libalgorithm-diff-perl, libipc-run-perl, libio-string-perl, libxml-twig-perl,
+Build-Depends: debhelper (>= 7.0.50), libmodule-build-perl
+Build-Depends-Indep: perl, bioperl (>= 1.6.0), libalgorithm-diff-perl,
libipc-run-perl, libio-string-perl, libxml-twig-perl,
libarray-compare-perl, libtree-dagnode-perl
Maintainer: Debian Med Packaging Team
<[email protected]>
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <[email protected]>
-Standards-Version: 3.8.1
+Standards-Version: 3.8.3
Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/bioperl-run/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bioperl-run/trunk/
Homepage: http://www.bioperl.org/wiki/Run_package
Package: bioperl-run
Architecture: all
-Depends: perl (>= 5.6.1), ${misc:Depends}, bioperl (>= 1.6.0)
+Depends: ${misc:Depends}, bioperl (>= 1.6.0)
Recommends: libalgorithm-diff-perl, libipc-run-perl, libio-string-perl,
libxml-twig-perl
Suggests: amap-align, emboss, hmmer, wise, molphy, phylip, clustalw, sim4,
t-coffee, blast2, exonerate
Description: Wrapper modules for BioPerl
Modified: trunk/packages/bioperl-run/trunk/debian/copyright
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/copyright 2009-09-02 21:17:29 UTC
(rev 3861)
+++ trunk/packages/bioperl-run/trunk/debian/copyright 2009-09-03 02:04:06 UTC
(rev 3862)
@@ -1,7 +1,9 @@
-Name: BioPerl-run
-Maintainer: Bioperl Team <[email protected]>
-Source: http://www.bioperl.org/DIST/BioPerl-run-1.6.1.tar.gz
+Machine-readable license summary, see ’http://dep.debian.net/deps/dep5/’.
+Name : BioPerl-run
+Contact : Bioperl Team <[email protected]>
+Source : http://www.bioperl.org/DIST/BioPerl-run-1.6.1.tar.gz
+
Copyright: 1997-2009 Bioperl Team <[email protected]>
Sendu Bala <bix at sendu.me.uk>
Jer-Ming Chia <giscjm at nus.edu.sg>
@@ -27,47 +29,46 @@
Tiequan Zhang <tqzhang1973 at yahoo.com>
Juguang Xiao <juguang at tll.org.sg>
License: Perl
- Everyone can use it! We don't care if you are academic, corporate, or
- government. BioPerl is licensed under the same terms as Perl itself, which
- means it is dually-licensed under either the Artistic or GPL licenses. The
Perl
- Artistic License, or the GNU GPL covers all the legalese and what you can and
- can't do with the source code.
- .
- We do appreciate:
- .
- * You letting us know you sell or use a product that uses BioPerl. This helps
- us show people how useful our toolkit is. It also helps us if we seek
funding
- from a government source, to identify the utility of the code to many
different
- groups of users. Add your project and institution to our BioPerl Users
page.
- .
- * If you fix bugs, please let us know about them. Because Bioperl is
- dual-licensed under the GPL or Artistic licenses, you can choose the
Artistic
- license, which means that you are not required to submit the code fixes,
but in
- the spirit of making a better product we hope you'll contribute back to the
- community any insight or code improvements.
- .
- * Please include the AUTHORS file and ascribe credit to the original BioPerl
- toolkit where appropriate.
- .
- * If you are an academic and you use the software, please cite the article.
- See the BioPerl publications for a list of papers which describe
components in
- the toolkit.
-Comment: see http://www.bioperl.org/wiki/Licensing_BioPerl
+
+ Everyone can use it! We don't care if you are academic, corporate, or
+ government. BioPerl is licensed under the same terms as Perl itself,
which
+ means it is dually-licensed under either the Artistic or GPL licenses.
The Perl
+ Artistic License, or the GNU GPL covers all the legalese and what you
can and
+ can't do with the source code.
+
+ We do appreciate:
+
+ * You letting us know you sell or use a product that uses BioPerl.
This helps
+ us show people how useful our toolkit is. It also helps us if we
seek funding
+ from a government source, to identify the utility of the code to
many different
+ groups of users. Add your project and institution to our BioPerl
Users page.
+
+ * If you fix bugs, please let us know about them. Because Bioperl is
+ dual-licensed under the GPL or Artistic licenses, you can choose the
Artistic
+ license, which means that you are not required to submit the code
fixes, but in
+ the spirit of making a better product we hope you'll contribute back
to the
+ community any insight or code improvements.
+
+ * Please include the AUTHORS file and ascribe credit to the original
BioPerl
+ toolkit where appropriate.
+
+ * If you are an academic and you use the software, please cite the
article.
+ See the BioPerl publications for a list of papers which describe
components in
+ the toolkit.
+See http://www.bioperl.org/wiki/Licensing_BioPerl
+
License: Perl
This program is free software; you can redistribute it and/or modify
it under the terms of either:
- .
+
a) the GNU General Public License as published by the Free Software
Foundation; either version 1, or (at your option) any later
version, or
- .
+
b) the "Artistic License" which comes with Perl.
-Comment: On Debian systems, the complete text of the Artistic License can be
- found in `/usr/share/common-licenses/Artistic', and the complete text of the
- GNU General Public License can be found in `/usr/share/common-licenses/GPL'.
-Files: debian/*
-Copyright: 2009 Charles Plessy <[email protected]>
-License: Same as BioPerl itself
- (see above)
+On Debian systems, the complete text of the Artistic License can be found in
+‘/usr/share/common-licenses/Artistic’, and the complete text of the latest
+version of the GNU General Public License can be found in
+‘/usr/share/common-licenses/GPL’.
Modified: trunk/packages/bioperl-run/trunk/debian/rules
===================================================================
--- trunk/packages/bioperl-run/trunk/debian/rules 2009-09-02 21:17:29 UTC
(rev 3861)
+++ trunk/packages/bioperl-run/trunk/debian/rules 2009-09-03 02:04:06 UTC
(rev 3862)
@@ -2,9 +2,12 @@
build: build-stamp
build-stamp:
- DEB_BUILD_OPTIONS="$$DEB_BUILD_OPTIONS nocheck" dh build
+ dh build
touch $@
+# Test suite is failing on buildds because it does not detect correctly the
absence of the Eponine program.
+override_dh_auto_test:
+
clean:
dh $@
_______________________________________________
debian-med-commit mailing list
[email protected]
http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
