Author: plessy Date: 2009-09-17 04:05:04 +0000 (Thu, 17 Sep 2009) New Revision: 3994
Added: trunk/packages/emboss/trunk/debian/patches/transient-vectorstrip.patch Modified: trunk/packages/emboss/trunk/debian/changelog trunk/packages/emboss/trunk/debian/patches/series Log: I will be using this patch at work (hence the strange version number in the changelog). I am considering to keep it in the next update of our package if it is not integrated to the next officialy released patch set. Modified: trunk/packages/emboss/trunk/debian/changelog =================================================================== --- trunk/packages/emboss/trunk/debian/changelog 2009-09-16 15:59:53 UTC (rev 3993) +++ trunk/packages/emboss/trunk/debian/changelog 2009-09-17 04:05:04 UTC (rev 3994) @@ -1,8 +1,9 @@ -emboss (6.1.0-5) UNRELEASED; urgency=low +emboss (6.1.0-5~unreleased) UNRELEASED; urgency=low * debian/changelog: corrected an error on a progam name (vectorstrip). + * debian/patches/transient-vectorstrip.patch: keep quality scores. - -- Charles Plessy <[email protected]> Wed, 16 Sep 2009 15:43:41 +0900 + -- Charles Plessy <[email protected]> Thu, 17 Sep 2009 11:45:08 +0900 emboss (6.1.0-4) unstable; urgency=low Modified: trunk/packages/emboss/trunk/debian/patches/series =================================================================== --- trunk/packages/emboss/trunk/debian/patches/series 2009-09-16 15:59:53 UTC (rev 3993) +++ trunk/packages/emboss/trunk/debian/patches/series 2009-09-17 04:05:04 UTC (rev 3994) @@ -1,2 +1,3 @@ using-pager-in-tfm.patch official-upstream-patch.patch +transient-vectorstrip.patch Added: trunk/packages/emboss/trunk/debian/patches/transient-vectorstrip.patch =================================================================== --- trunk/packages/emboss/trunk/debian/patches/transient-vectorstrip.patch (rev 0) +++ trunk/packages/emboss/trunk/debian/patches/transient-vectorstrip.patch 2009-09-17 04:05:04 UTC (rev 3994) @@ -0,0 +1,19 @@ +Description: keeps quality scores. + This is a transient patch for my personal use, but that I would like to share with others. + I will discuss with Upstream about the possibiltiy to have it in the next official patch release. +Origin: http://lists.open-bio.org/pipermail/emboss/2009-September/003735.html +--- emboss-6.1.0.orig/ajax/ajseq.c ++++ emboss-6.1.0/ajax/ajseq.c +@@ -782,6 +782,12 @@ + if (seq->Fttable) + pthis->Fttable = ajFeattableCopy(seq->Fttable); + ++ if (seq->Accuracy) ++ { ++ AJCNEW0(pthis->Accuracy,seq->Seq->Len); ++ memmove(pthis->Accuracy,seq->Accuracy,seq->Seq->Len*sizeof(float)); ++ } ++ + return pthis; + } + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
