Author: fxf-guest Date: 2009-10-23 17:37:34 +0000 (Fri, 23 Oct 2009) New Revision: 4245
Added: trunk/packages/beast-mcmc/ trunk/packages/beast-mcmc/tags/ trunk/packages/beast-mcmc/trunk/ trunk/packages/beast-mcmc/trunk/debian/ trunk/packages/beast-mcmc/trunk/debian/changelog trunk/packages/beast-mcmc/trunk/debian/control trunk/packages/beast-mcmc/trunk/debian/copyright trunk/packages/beast-mcmc/trunk/debian/patches/ trunk/packages/beast-mcmc/trunk/debian/rules Log: * Iniial release of beast-mcmc Added: trunk/packages/beast-mcmc/trunk/debian/changelog =================================================================== --- trunk/packages/beast-mcmc/trunk/debian/changelog (rev 0) +++ trunk/packages/beast-mcmc/trunk/debian/changelog 2009-10-23 17:37:34 UTC (rev 4245) @@ -0,0 +1,6 @@ +beast-mcmc (1.5.2+svnr2377-1) UNRELEASED; urgency=low + + * Initial release. (Closes: #552101) + * New upstream SVN snapshot + + -- Felix Feyertag <f...@atalanta> Fri, 23 Oct 2009 15:41:31 +0200 Added: trunk/packages/beast-mcmc/trunk/debian/control =================================================================== --- trunk/packages/beast-mcmc/trunk/debian/control (rev 0) +++ trunk/packages/beast-mcmc/trunk/debian/control 2009-10-23 17:37:34 UTC (rev 4245) @@ -0,0 +1,30 @@ +Source: beast-mcmc +Section: science +Priority: optional +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Felix Feyertag <[email protected]> +Build-Depends: debhelper (>= 7) +Standards-Version: 3.8.0 +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/beast-mcmc/trunk/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/beast-mcmc/trunk/ +XS-Autobuild: yes +Homepage: http://beast.bio.ed.ac.uk/ + +Package: beast-mcmc +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: Bayesian MCMC phylogenetic inference + BEAST is a cross-platform program for Bayesian MCMC analysis of molecular + sequences. It is entirely orientated towards rooted, time-measured + phylogenies inferred using strict or relaxed molecular clock models. It + can be used as a method of reconstructing phylogenies but is also a + framework for testing evolutionary hypotheses without conditioning on a + single tree topology. BEAST uses MCMC to average over tree space, so that + each tree is weighted proportional to its posterior probability. Included + is a simple to use user-interface program for setting up standard + analyses and a suit of programs for analysing the results. + . + When publishing results using this software please cite: + Drummond AJ, Rambaut A (2007) "BEAST: Bayesian evolutionary analysis by + sampling trees." BMC Evolutionary Biology 7:214 Added: trunk/packages/beast-mcmc/trunk/debian/copyright =================================================================== --- trunk/packages/beast-mcmc/trunk/debian/copyright (rev 0) +++ trunk/packages/beast-mcmc/trunk/debian/copyright 2009-10-23 17:37:34 UTC (rev 4245) @@ -0,0 +1,47 @@ +Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’. + +Name: BEAST-MCMC +Source: http://beast-mcmc.googlecode.com/svn/trunk/ + +Copyright: 2002-2006 Alexei Drummond and Andrew Rambaut +License: LGPL-3+ + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU Lesser General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU Lesser General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + +On a Debian GNU/Linux system, the GNU Lesser GPL license version 3 is included +in the file ‘/usr/share/common-licenses/LGPL-3’, and the GNU GPL license +version 3 is included in the file ‘/usr/share/common-licenses/GPL-3’. + +License: other + + BEAST includes software libraries from projects whose licensing + terms require that the following notices be included when they are + distributed in binary form and that the recipient be given a copy of + their respective licenses. + + This product includes software developed by the + JDOM Project (http://www.jdom.org/) + + This product includes software developed by + The Apache Software Foundation (http://www.apache.org/) + + The license for JDOM can be read in the LICENSE.txt file in the + source distribution available at http://www.jdom.org/ + + The license for the Commons Math library can be read at + http://www.apache.org/licenses/LICENSE-2.0 or in the LICENSE.txt file + in the source distribution available at + http://jakarta.apache.org/commons/math/ + +This package was debianized by Felix Feyertag <[email protected]>. Added: trunk/packages/beast-mcmc/trunk/debian/rules =================================================================== --- trunk/packages/beast-mcmc/trunk/debian/rules (rev 0) +++ trunk/packages/beast-mcmc/trunk/debian/rules 2009-10-23 17:37:34 UTC (rev 4245) @@ -0,0 +1,15 @@ +#!/usr/bin/make -f +# -*- makefile -*- +PACKAGE = beast-mcmc +SRC_VERSION := $(shell dpkg-parsechangelog | sed -ne 's/^Version: \(\([0-9]\+\):\)\?\(.*\)-.*/\3/p') +SVN_REVISION := $(shell echo $(SRC_VERSION) | awk -F"+" '{ print $$2 }' | sed 's/svn//' ) +TARBALL = $(PACKAGE)_$(SRC_VERSION).orig.tar.gz +.PHONY: get-orig-source +get-orig-source: + rm -rf get-orig-source $(TARBALL) + mkdir get-orig-source + svn export -r $(SVN_REVISION) http://beast-mcmc.googlecode.com/svn/trunk/ \ + get-orig-source/$(PACKAGE)-$(SRC_VERSION).orig + GZIP=--best tar czf $(TARBALL) -C get-orig-source $(PACKAGE)-$(SRC_VERSION).orig + rm -rf get-orig-source + echo " "$(TARBALL)" created; move it to the right destination to build the package" Property changes on: trunk/packages/beast-mcmc/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
