Author: plessy Date: 2010-01-06 13:16:22 +0000 (Wed, 06 Jan 2010) New Revision: 4520
Modified: trunk/packages/seaview/trunk/debian/changelog trunk/packages/seaview/trunk/debian/copyright trunk/packages/seaview/trunk/debian/references trunk/packages/seaview/trunk/debian/upstream-metadata.yaml Log: New upstream release fixing a couple of bugs and having a new bibliographic reference. Modified: trunk/packages/seaview/trunk/debian/changelog =================================================================== --- trunk/packages/seaview/trunk/debian/changelog 2010-01-06 03:37:36 UTC (rev 4519) +++ trunk/packages/seaview/trunk/debian/changelog 2010-01-06 13:16:22 UTC (rev 4520) @@ -1,16 +1,20 @@ -seaview (1:4.2-2) UNRELEASED; urgency=low +seaview (1:4.2.1-1) unstable; urgency=low + [ Charles Plessy ] + * New upstream release that can be compiled with GCC 4.4.2 + Closes: #560438, Thanks to Luk Claes for the help. + * Updated bibliographic reference and Debian copyright file. + [ Andreas Tille ] - * debian/control: - - s/Debian-Med/Debian Med/ + * s/Debian-Med/Debian Med/ in debian/control. - -- Charles Plessy <[email protected]> Sun, 18 Oct 2009 22:44:03 +0900 + -- Charles Plessy <[email protected]> Wed, 06 Jan 2010 21:59:51 +0900 seaview (1:4.2-1) unstable; urgency=low * New upstream release. * debian/control: - - Build depend on unversionned libjpeg-dev package. + - Build depend on unversionned libjpeg-dev package. - Added XS-Autobuild: yes to benefit from the non-free autobuilders. - checked package conformance with Policy 3.8.3 (no changes needed). * Documented zlib.conf in debian/copyright. Modified: trunk/packages/seaview/trunk/debian/copyright =================================================================== --- trunk/packages/seaview/trunk/debian/copyright 2010-01-06 03:37:36 UTC (rev 4519) +++ trunk/packages/seaview/trunk/debian/copyright 2010-01-06 13:16:22 UTC (rev 4520) @@ -2,7 +2,7 @@ Name : SeaView Contact : Manolo Gouy <[email protected]> -Source : ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.2.tar.gz +Source : ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/seaview_4.2.1.tar.gz Disclamer : This package is not part of the Debian operating system. The seaview source and binary Debian packages are part of the “non-free” area @@ -13,7 +13,7 @@ mailing lists). The licences of SeaView do not forbid Debian from using autobuilders to create binary packages. -Copyright: 1996-2009 Manolo Gouy <[email protected]> +Copyright: 1996-2010 Manolo Gouy <[email protected]> License: GPL-3+ with PHYLIP exemption. This program, except where indicated, is free software; you can redistribute it and/or @@ -146,6 +146,6 @@ © 2003 Brian R Furry <[email protected]> © 2005 Steve Langasek <[email protected]> © 2007 Nelson A. de Oliveira <[email protected]> - © 2006-2009 Charles Plessy <[email protected]> + © 2006–2010 Charles Plessy <[email protected]> License: unknown Please treat the contributions of Charles Plessy as if they were in the public domain. Modified: trunk/packages/seaview/trunk/debian/references =================================================================== --- trunk/packages/seaview/trunk/debian/references 2010-01-06 03:37:36 UTC (rev 4519) +++ trunk/packages/seaview/trunk/debian/references 2010-01-06 13:16:22 UTC (rev 4520) @@ -1,3 +1,16 @@ +...@article{manologouy10232009, +author = {Gouy, Manolo and Guindon, Stephane and Gascuel, Olivier}, +title = {{SeaView version 4 : a multiplatform graphical user interface for sequence alignment and phylogenetic tree building}}, +journal = {Mol Biol Evol}, +volume = {}, +number = {}, +pages = {msp259}, +doi = {10.1093/molbev/msp259}, +year = {2009}, +URL = {http://mbe.oxfordjournals.org/cgi/content/abstract/msp259v1}, +eprint = {http://mbe.oxfordjournals.org/cgi/reprint/msp259v1.pdf} +} + @article{N.Galtier12011996, author = {Galtier, N. and Gouy, M. and Gautier, C.}, title = {{SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny}}, @@ -10,4 +23,3 @@ URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/12/6/543}, eprint = {http://bioinformatics.oxfordjournals.org/cgi/reprint/12/6/543.pdf} } - Modified: trunk/packages/seaview/trunk/debian/upstream-metadata.yaml =================================================================== --- trunk/packages/seaview/trunk/debian/upstream-metadata.yaml 2010-01-06 03:37:36 UTC (rev 4519) +++ trunk/packages/seaview/trunk/debian/upstream-metadata.yaml 2010-01-06 13:16:22 UTC (rev 4520) @@ -1,20 +1,20 @@ Contact: Manolo Gouy <[email protected]> Documentation: http://pbil.univ-lyon1.fr/software/seaview_data/seaview -DOI: 10.1093/bioinformatics/12.6.543 +DOI: 10.1093/molbev/msp259 Downloads: ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/ Homepage: http://pbil.univ-lyon1.fr/software/seaview -PMID: 9021275 +PMID: 19854763 Reference: - author: Galtier, N. and Gouy, M. and Gautier, C. - title: SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny - journal: Comput. Appl. Biosci. - volume: 12 - number: 6 - pages: 543-548 + author: Gouy, Manolo and Guindon, Stephane and Gascuel, Olivier + title: SeaView version 4 : a multiplatform graphical user interface for sequence alignment and phylogenetic tree building + journal: Mol Biol Evol + volume: Advanced Online Publication + number: + pages: msp259 doi: 10.1093/bioinformatics/12.6.543 - year: 1996 - URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/12/6/543 - eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/12/6/543.pdf + year: 2009 + URL: http://mbe.oxfordjournals.org/cgi/content/abstract/msp259v1 + eprint: http://mbe.oxfordjournals.org/cgi/reprint/msp259v1.pdf Screenshots: - http://pbil.univ-lyon1.fr/binaries/seaview4.png - http://pbil.univ-lyon1.fr/binaries/seaview-tree.png _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
