Author: tille Date: 2010-06-04 12:08:50 +0000 (Fri, 04 Jun 2010) New Revision: 4864
Added: trunk/packages/R/r-cran-qtl/trunk/debian/source/ trunk/packages/R/r-cran-qtl/trunk/debian/source/format trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml Modified: trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian trunk/packages/R/r-cran-qtl/trunk/debian/changelog trunk/packages/R/r-cran-qtl/trunk/debian/control trunk/packages/R/r-cran-qtl/trunk/debian/rules Log: New upstream version, moved from pkg-bioc repository to debian-med (hope this move was not to rude without previous announcement) updated to recent R packaging habits in Debian Med Modified: trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian 2010-06-04 11:46:44 UTC (rev 4863) +++ trunk/packages/R/r-cran-qtl/trunk/debian/README.Debian 2010-06-04 12:08:50 UTC (rev 4864) @@ -1,23 +1,16 @@ -The debian package name was changed fom qtl on the CRAN archives to -r-cran-qtl. This best reflects the origin of the package obvious. The -qtl source are referred to as r/qtl on the upstream web pages -(http://www.biostat.jhsph.edu/~kbroman/qtl/). +README.Debian for r-cran-qtl: +============================= -Dirk Eddelbuettel <[email protected]> kindly sponsored the initial release -and performed many smaller changes to streamline the debianisation. I -very much thank him for this. - -The chromosomal linkage analyses for a longer time seemed neglected in -the bioinformatics community. If the distribution of this package in -Debian had some positive side effect in improving the communication -between researchers in bioinformatics and genetics, then we have -achieved something real good. - When using the package, please cite Broman KW, Wu H, Sen S, Churchill GA (2003) R/qtl: QTL mapping in experimental crosses. Bioinformatics 19:889-890 in your publications. +Notes on how this package can be tested. +──────────────────────────────────────── +This package can be tested by loading it into R with the command +‘library(qtl)’ in order to confirm its integrity. + -- Steffen Moeller <[email protected]> Wed, 10 Oct 2007 13:43:39 +0200 Modified: trunk/packages/R/r-cran-qtl/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/changelog 2010-06-04 11:46:44 UTC (rev 4863) +++ trunk/packages/R/r-cran-qtl/trunk/debian/changelog 2010-06-04 12:08:50 UTC (rev 4864) @@ -1,3 +1,17 @@ +qtl (1.16-6-1) unstable; urgency=low + + * New upstream version + * Added myself to Uploaders + * Standards-Version: 3.8.4 (no changes needed) + * Debhelper 7 + * Moved from pkg-bioc to debian-med SVN repository + * Updated README.Debian + * Added upstream-metadata.yaml + * debian/{control,rules}: Depends: ${R:Depends} + * Source format 3.0 (quilt) + + -- Andreas Tille <[email protected]> Fri, 04 Jun 2010 13:50:18 +0200 + qtl (1.14-2-1) unstable; urgency=low * dependency on R 2.7.10 Modified: trunk/packages/R/r-cran-qtl/trunk/debian/control =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/control 2010-06-04 11:46:44 UTC (rev 4863) +++ trunk/packages/R/r-cran-qtl/trunk/debian/control 2010-06-04 12:08:50 UTC (rev 4864) @@ -2,16 +2,17 @@ Section: gnu-r Priority: optional Maintainer: Debian-Med Packaging Team <[email protected]> -Uploaders: Steffen Moeller <[email protected]> -Build-Depends: debhelper (>= 5.0.0), cdbs, r-base-dev (>= 2.10.0~20091019) -Standards-Version: 3.8.3 -Vcs-Browser: http://svn.debian.org/wsvn/pkg-bioc/trunk/packages/qtl/trunk/?rev=0&sc=0 -Vcs-Svn: svn://svn.debian.org/svn/pkg-bioc/trunk/packages/qtl/trunk/ +Uploaders: Steffen Moeller <[email protected]>, + Andreas Tille <[email protected]> +Build-Depends: debhelper (>= 7), cdbs, r-base-dev (>= 2.10.0~20091019) +Standards-Version: 3.8.4 +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/R/r-cran-qtl/trunk/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/R/r-cran-qtl/trunk/ Homepage: http://www.rqtl.org Package: r-cran-qtl Architecture: any -Depends: ${shlibs:Depends}, r-base-core (>= 2.10.0~20091019) +Depends: ${shlibs:Depends}, ${R:Depends} Description: GNU R package for genetic marker linkage analysis R/qtl is an extensible, interactive environment for mapping quantitative trait loci (QTLs) in experimental crosses. It is implemented as an Modified: trunk/packages/R/r-cran-qtl/trunk/debian/rules =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/rules 2010-06-04 11:46:44 UTC (rev 4863) +++ trunk/packages/R/r-cran-qtl/trunk/debian/rules 2010-06-04 12:08:50 UTC (rev 4864) @@ -4,3 +4,7 @@ # Copyright 2003-2006 by Dirk Eddelbuettel <[email protected]> include /usr/share/R/debian/r-cran.mk + +install/$(package):: + # Require a number equal or superior than the R version the package was built with. + echo "R:Depends=r-base-core (>= $(shell R --version | head -n1 | perl -ne 'print / +([0-9]\.[0-9]+\.[0-9])/')~)" >> debian/$(package).substvars Added: trunk/packages/R/r-cran-qtl/trunk/debian/source/format =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/source/format (rev 0) +++ trunk/packages/R/r-cran-qtl/trunk/debian/source/format 2010-06-04 12:08:50 UTC (rev 4864) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml =================================================================== --- trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml (rev 0) +++ trunk/packages/R/r-cran-qtl/trunk/debian/upstream-metadata.yaml 2010-06-04 12:08:50 UTC (rev 4864) @@ -0,0 +1,9 @@ +Homepage: http://www.rqtl.org +Name: R/qtl: A QTL mapping environment +Reference: + Author: K. W. Broman, H. Wu, S. Sen, G. A. Churchill + Title: R/qtl: QTL mapping in experimental crosses. + Journal: Bioinformatics + Number: 19 + Pages: 889-890 + Year: 2003 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
