Author: moeller Date: 2010-06-26 19:14:12 +0000 (Sat, 26 Jun 2010) New Revision: 4946
Added: trunk/packages/denoiser/ trunk/packages/denoiser/trunk/ trunk/packages/denoiser/trunk/debian/ trunk/packages/denoiser/trunk/debian/README.Debian trunk/packages/denoiser/trunk/debian/README.source trunk/packages/denoiser/trunk/debian/changelog trunk/packages/denoiser/trunk/debian/control trunk/packages/denoiser/trunk/debian/copyright trunk/packages/denoiser/trunk/debian/docs trunk/packages/denoiser/trunk/debian/patches/ trunk/packages/denoiser/trunk/debian/patches/makefile trunk/packages/denoiser/trunk/debian/patches/series trunk/packages/denoiser/trunk/debian/rules trunk/packages/denoiser/trunk/debian/watch Log: A rudimentary start to package donoiser. Property changes on: trunk/packages/denoiser/trunk/debian ___________________________________________________________________ Added: mergeWithUpstream + 1 Added: trunk/packages/denoiser/trunk/debian/README.Debian =================================================================== --- trunk/packages/denoiser/trunk/debian/README.Debian (rev 0) +++ trunk/packages/denoiser/trunk/debian/README.Debian 2010-06-26 19:14:12 UTC (rev 4946) @@ -0,0 +1,3 @@ +The packaging is not yet complete. + +Steffen Added: trunk/packages/denoiser/trunk/debian/README.source =================================================================== --- trunk/packages/denoiser/trunk/debian/README.source (rev 0) +++ trunk/packages/denoiser/trunk/debian/README.source 2010-06-26 19:14:12 UTC (rev 4946) @@ -0,0 +1,5 @@ +denoiser for Debian +------------------- + +A central Makefile was added. + Added: trunk/packages/denoiser/trunk/debian/changelog =================================================================== --- trunk/packages/denoiser/trunk/debian/changelog (rev 0) +++ trunk/packages/denoiser/trunk/debian/changelog 2010-06-26 19:14:12 UTC (rev 4946) @@ -0,0 +1,6 @@ +denoiser (0.8.5-1) unstable; urgency=low + + * Initial release (Closes: #) + + -- Sri Girish Srinivasa Murthy <[email protected]> Sat, 26 Jun 2010 20:36:02 +0200 + Added: trunk/packages/denoiser/trunk/debian/control =================================================================== --- trunk/packages/denoiser/trunk/debian/control (rev 0) +++ trunk/packages/denoiser/trunk/debian/control 2010-06-26 19:14:12 UTC (rev 4946) @@ -0,0 +1,20 @@ +Source: denoiser +Section: science +Priority: extra +Maintainer: Sri Girish Srinivasa Murthy <[email protected]> +Build-Depends: debhelper (>= 7), cdbs, python, ghc6 +Standards-Version: 3.8.4 +Homepage: http://www.microbio.me/denoiser/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/denoiser/trunk/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/denoiser/trunk/ + +Package: denoiser +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends}, ${misc:Depends}, ${python:Depends} +Description: Rapid denoising of pyrosequencing amplicon data + To denoise pyrosequencing amplicon data, the package exploits the + rank-abundance distribution. PyroNoise uses an expectation maximization + (EM) algorithm to figure out the most likely sequence for every read. We, + instead, use a greedy scheme that can be seen as an approximation to + PyroNoise. According to several test data sets, the approximation gives + very similar results in a fraction of the time. Added: trunk/packages/denoiser/trunk/debian/copyright =================================================================== --- trunk/packages/denoiser/trunk/debian/copyright (rev 0) +++ trunk/packages/denoiser/trunk/debian/copyright 2010-06-26 19:14:12 UTC (rev 4946) @@ -0,0 +1,24 @@ +This work was packaged for Debian by: + + Sri Girish Srinivasa Murthy <[email protected]> + and Steffen Moeller <[email protected]> + on Sat, 26 Jun 2010 21:13:42 +0200 + +It was downloaded from <http://www.microbio.me/denoiser/> + +Upstream Authors: + + +Copyright: + + +License: + + +The Debian packaging is: + + Copyright (C) 2010 Sri Girish Srinivasa Murthy <[email protected]> + and Steffen Moeller <[email protected]> + +and is licensed under the same copyright, +see `/usr/share/common-licenses/GPL-2'. Added: trunk/packages/denoiser/trunk/debian/docs =================================================================== --- trunk/packages/denoiser/trunk/debian/docs (rev 0) +++ trunk/packages/denoiser/trunk/debian/docs 2010-06-26 19:14:12 UTC (rev 4946) @@ -0,0 +1 @@ +FAQ.txt Added: trunk/packages/denoiser/trunk/debian/patches/makefile =================================================================== --- trunk/packages/denoiser/trunk/debian/patches/makefile (rev 0) +++ trunk/packages/denoiser/trunk/debian/patches/makefile 2010-06-26 19:14:12 UTC (rev 4946) @@ -0,0 +1,17 @@ +Index: denoiser-0.85/Makefile +=================================================================== +--- /dev/null 1970-01-01 00:00:00.000000000 +0000 ++++ denoiser-0.85/Makefile 2010-06-26 20:58:34.000000000 +0200 +@@ -0,0 +1,12 @@ ++#!/usr/bin/make -f ++ ++all: ++ $(MAKE) -C FlowgramAlignment ++ ++ ++clean: ++ $(MAKE) -C FlowgramAlignment $@ ++ ++distclean: clean ++ find FlowgramAlignment -name "FlowgramAli_4frame_linux_*" | xargs -r rm ++ Added: trunk/packages/denoiser/trunk/debian/patches/series =================================================================== --- trunk/packages/denoiser/trunk/debian/patches/series (rev 0) +++ trunk/packages/denoiser/trunk/debian/patches/series 2010-06-26 19:14:12 UTC (rev 4946) @@ -0,0 +1 @@ +makefile Added: trunk/packages/denoiser/trunk/debian/rules =================================================================== --- trunk/packages/denoiser/trunk/debian/rules (rev 0) +++ trunk/packages/denoiser/trunk/debian/rules 2010-06-26 19:14:12 UTC (rev 4946) @@ -0,0 +1,8 @@ +#!/usr/bin/make -f +# -*- makefile -*- + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +%: + dh $@ Property changes on: trunk/packages/denoiser/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/denoiser/trunk/debian/watch =================================================================== --- trunk/packages/denoiser/trunk/debian/watch (rev 0) +++ trunk/packages/denoiser/trunk/debian/watch 2010-06-26 19:14:12 UTC (rev 4946) @@ -0,0 +1,2 @@ +version=3 +http://www.microbio.me/denoiser/Denoiser_([.0-9]+)\.tgz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
