Author: moeller Date: 2010-08-20 22:57:12 +0000 (Fri, 20 Aug 2010) New Revision: 5177
Added: trunk/packages/bioperl/branches/bioperl-1.2.3/ Removed: trunk/packages/bioperl/branches/bioperl-1.2.3/debian/watch Modified: trunk/packages/bioperl/branches/bioperl-1.2.3/debian/changelog trunk/packages/bioperl/branches/bioperl-1.2.3/debian/control trunk/packages/bioperl/branches/bioperl-1.2.3/debian/rules Log: Updating version of bioperl1.2.3. Modified: trunk/packages/bioperl/branches/bioperl-1.2.3/debian/changelog =================================================================== --- trunk/packages/bioperl/trunk/debian/changelog 2010-08-18 13:44:23 UTC (rev 5141) +++ trunk/packages/bioperl/branches/bioperl-1.2.3/debian/changelog 2010-08-20 22:57:12 UTC (rev 5177) @@ -1,3 +1,9 @@ +bioperl1.2.3 (1.2.3-1) unstable; urgency=low + + * Branching from 1.6 to accommodate the Ensembl suite (Closes: #593588) + + -- Richard Holland <[email protected]> Thu, 19 Aug 2010 15:30:11 +0200 + bioperl (1.6.1-2) unstable; urgency=low * Removed bibliographic information from the long description Modified: trunk/packages/bioperl/branches/bioperl-1.2.3/debian/control =================================================================== --- trunk/packages/bioperl/trunk/debian/control 2010-08-18 13:44:23 UTC (rev 5141) +++ trunk/packages/bioperl/branches/bioperl-1.2.3/debian/control 2010-08-20 22:57:12 UTC (rev 5177) @@ -1,10 +1,11 @@ -Source: bioperl +Source: bioperl1.2.3 Section: science Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> DM-Upload-Allowed: yes Uploaders: Charles Plessy <[email protected]>, Steffen Moeller <[email protected]>, + Richard Holland <[email protected]> Build-Depends: debhelper (>= 7) Build-Depends-Indep: perl, perl-modules (>= 5.10.1), libio-string-perl, @@ -42,18 +43,17 @@ libxml-simple-perl, libxml-writer-perl, libxml-libxml-perl, - libwww-perl, + libwww-perl5.808-perl|libwww-perl, # Needed to avoid downloading DTDs during the tests and therefore fail when network is not available: libxml-sax-expatxs-perl -Standards-Version: 3.8.4 +Standards-Version: 3.9.1 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bioperl/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/bioperl/trunk/ Homepage: http://www.bioperl.org/ -Package: bioperl +Package: bioperl1.2.3 Architecture: all Depends: libio-string-perl, libdata-stag-perl, ${misc:Depends}, ${perl:Depends} -Recommends: bioperl-run ( >= 1.6.0 ), # Recommended in Build.PL libace-perl, libalgorithm-munkres-perl, @@ -86,7 +86,7 @@ libxml-twig-perl, libxml-writer-perl, libxml-libxml-perl, - libwww-perl + libwww-perl5.808-perl|libwww-perl Suggests: libmath-random-perl, # libmath-random-perl is non-free. libxml-sax-expatxs-perl Modified: trunk/packages/bioperl/branches/bioperl-1.2.3/debian/rules =================================================================== --- trunk/packages/bioperl/trunk/debian/rules 2010-08-18 13:44:23 UTC (rev 5141) +++ trunk/packages/bioperl/branches/bioperl-1.2.3/debian/rules 2010-08-20 22:57:12 UTC (rev 5177) @@ -7,11 +7,8 @@ build: build-stamp build-stamp: dh_testdir - perl Build.PL $(NETWORK) < /dev/null # non-interactive, uses defaults - ./Build -ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) - ./Build test -endif + no | perl Makefile.PL $(NETWORK) + $(MAKE) touch build-stamp clean: @@ -26,17 +23,21 @@ dh_testdir dh_testroot dh_prep - ./Build install \ - --install_base /usr \ - --install_path lib=/usr/share/perl5 \ - --install_path bindoc=/usr/share/man/man1 \ - --install_path libdoc=/usr/share/man/man3 \ - --destdir $(CURDIR)/debian/bioperl + $(MAKE) DESTDIR=$(CURDIR)/debian/bioperl/ SITEPREFIX=/usr INSTALLSITELIB=/usr/share/perl5 install +# --install_base /usr \ +# --install_path lib=/usr/share/perl5 \ +# --install_path bindoc=/usr/share/man/man1 \ +# --install_path libdoc=/usr/share/man/man3 \ +# --destdir $(CURDIR)/debian/bioperl find debian/bioperl -type f -name .packlist | xargs rm find $(CURDIR)/debian/bioperl -type d -empty -delete # prename is the rename utility written in perl usually available as /usr/bin/rename in Debian. - prename s/.pl$$// debian/bioperl/usr/bin/*pl + # no binaries in 1.2.3? + #prename s/.pl$$// debian/bioperl/usr/bin/*pl prename s/.pl.1p$$/.1p/ debian/bioperl/usr/share/man/man1/*1p + chmod +x debian/bioperl/usr/share/perl5/bptutorial.pl + rm -r debian/bioperl/usr/lib/perl + find debian -name perllocal.pod | xargs -r rm -f touch install-stamp binary-indep: build install Deleted: trunk/packages/bioperl/branches/bioperl-1.2.3/debian/watch =================================================================== --- trunk/packages/bioperl/trunk/debian/watch 2010-08-18 13:44:23 UTC (rev 5141) +++ trunk/packages/bioperl/branches/bioperl-1.2.3/debian/watch 2010-08-20 22:57:12 UTC (rev 5177) @@ -1,2 +0,0 @@ -version=3 -http://www.bioperl.org/DIST/BioPerl-([\d\.]+)\.tar\.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
