Author: moeller Date: 2010-11-25 16:42:28 +0000 (Thu, 25 Nov 2010) New Revision: 5509
Modified: trunk/packages/bowtie/trunk/debian/README.source trunk/packages/bowtie/trunk/debian/control Log: Even better now. Modified: trunk/packages/bowtie/trunk/debian/README.source =================================================================== --- trunk/packages/bowtie/trunk/debian/README.source 2010-11-25 16:31:22 UTC (rev 5508) +++ trunk/packages/bowtie/trunk/debian/README.source 2010-11-25 16:42:28 UTC (rev 5509) @@ -1,9 +1,12 @@ bowtie for Debian ----------------- -<this file describes information about the source package, see Debian policy -manual section 4.14. You WILL either need to modify or delete this file> +The bowtie package seems to rely on version 1.1 of the seqan library, +while Debian otherwise already features version 1.2. It yet remains +to be investigated, to what degree the two might possibly be +compatible. +We did not dare any respective experiments and hope for a clarification +by upstream on this issue - we just should not introduce any hidden +mistakes here. - - Modified: trunk/packages/bowtie/trunk/debian/control =================================================================== --- trunk/packages/bowtie/trunk/debian/control 2010-11-25 16:31:22 UTC (rev 5508) +++ trunk/packages/bowtie/trunk/debian/control 2010-11-25 16:42:28 UTC (rev 5509) @@ -1,15 +1,25 @@ Source: bowtie -Section: unknown +Section: science Priority: extra Maintainer: Steffen Moeller <[email protected]> +Uploaders: Yask Gupta <[email protected]> Build-Depends: debhelper (>= 7.0.50~) -Standards-Version: 3.8.4 -Homepage: <insert the upstream URL, if relevant> -#Vcs-Git: git://git.debian.org/collab-maint/bowtie.git -#Vcs-Browser: http://git.debian.org/?p=collab-maint/bowtie.git;a=summary +Standards-Version: 3.9.1 +Homepage: http://bowtie-bio.sourceforge.net/ +Vcs-Svn: svn+ssh://svn.debian.org/svn/debian-med/trunk/packages/bowtie/trunk +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/bowtie/trunk/ Package: bowtie Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} -Description: <insert up to 60 chars description> - <insert long description, indented with spaces> +Description: ultrafast memory-efficient short read aligner + This package addresses the problem to interpret the results from the + latest (2010) DNA sequencing technologies. Those will yield fairly + short stretches and those cannot be interpreted directly. It is the + challenge for tools like Bowtie to give a chromosomal location to the + short stretches of DNA sequenced per run. + . + Bowtie aligns short DNA sequences (reads) to the human genome at a rate + of over 25 million 35-bp reads per hour. Bowtie indexes the genome with + a Burrows-Wheeler index to keep its memory footprint small: typically + about 2.2 GB for the human genome (2.9 GB for paired-end). _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
