Author: smr Date: 2010-12-24 23:42:08 +0000 (Fri, 24 Dec 2010) New Revision: 5621
Added: trunk/packages/elastix/trunk/debian/copyright trunk/packages/elastix/trunk/debian/elastix.1 trunk/packages/elastix/trunk/debian/transformix.1 Log: Add copyright, manpages. Added: trunk/packages/elastix/trunk/debian/copyright =================================================================== --- trunk/packages/elastix/trunk/debian/copyright (rev 0) +++ trunk/packages/elastix/trunk/debian/copyright 2010-12-24 23:42:08 UTC (rev 5621) @@ -0,0 +1,35 @@ +Name: elastix +Maintainer: Stefan Klein and Marius Staring +Source: http://elastix.isi.uu.nl/ + + +Elastix Copyright Notice: + + Copyright (c) 2004-2010 University Medical Center Utrecht + All rights reserved. + + +Elastix was initially developed by Stefan Klein and Marius Staring +under contract to the Image Sciences Institute, University Medical +Center Utrecht, The Netherlands. + +Elastix is distributed under the new and simplified BSD license +approved by the Open Source Initiative (OSI) +[http://www.opensource.org/licenses/bsd-license.php]. This license +may be found in file /usr/share/common-licenses/BSD. + +The software is partially derived from the Insight Segmentation and +Registration Toolkit (ITK), which is also distributed under the new +and simplified BSD licence. The ITK is required by Elastix for +compilation of the source code. + +The copyright of the files in the Common/KNN/ann_1.1 subdirectory is +held by a third party, the University of Maryland. The ANN package is +distributed under the GNU Lesser Public Licence v2.1. This license +may be found in file /usr/share/common-licenses/LGPL-2.1. + +In the Debian package of elastix, ANN is statically linked. Clause 3 +of the LGPL is hereby invoked to re-license ANN under the GNU Public +License, v2 (see /usr/share/common-licenses/GPL-2). The elastix +package as a whole is therefore under the GPL v2 license. + Added: trunk/packages/elastix/trunk/debian/elastix.1 =================================================================== --- trunk/packages/elastix/trunk/debian/elastix.1 (rev 0) +++ trunk/packages/elastix/trunk/debian/elastix.1 2010-12-24 23:42:08 UTC (rev 5621) @@ -0,0 +1,39 @@ +.TH ELASTIX "1" "December 2010" "elastix version: 4.400" "User Commands" +.SH NAME +elastix \- manual page for elastix version: 4.400 +.SH SYNOPSIS +\fBelastix\fP \fImandatory-args\fR [\fIoptional-args\fR] +.SH DESCRIPTION +elastix registers a moving image to a fixed image. +The registration\-process is specified in the parameter file. +.PP +.SH OPTIONS +Call elastix from the command line with mandatory arguments: +.TP +\fB\-f\fR fixed image +.TP +\fB\-m\fR moving image +.TP +\fB\-out\fR output directory +.TP +\fB\-p\fR parameter file, elastix handles 1 or more "\-p" +.PP +Optional extra commands: +.TP +\fB\-fMask\fR mask for fixed image +.TP +\fB\-mMask\fR mask for moving image +.TP +\fB\-t0\fR parameter file for initial transform +.TP +\fB\-priority\fR set the process priority to high or belownormal (Windows only) +.TP +\fB\-threads\fR set the maximum number of threads of elastix +.PP +The parameter\-file must contain all the information necessary for elastix to run properly. That includes which metric to use, which optimizer, which transform, etc. +It must also contain information specific for the metric, optimizer, transform, ... +For a usable parameter\-file, see the website. +.SH "SEE ALSO" +.BR transformix (1) +.PP +Check the website http://elastix.isi.uu.nl, or mail [email protected]. Added: trunk/packages/elastix/trunk/debian/transformix.1 =================================================================== --- trunk/packages/elastix/trunk/debian/transformix.1 (rev 0) +++ trunk/packages/elastix/trunk/debian/transformix.1 2010-12-24 23:42:08 UTC (rev 5621) @@ -0,0 +1,41 @@ +.TH TRANSFORMIX "1" "December 2010" "transformix version: 4.400" "User Commands" +.SH NAME +transformix \- manual page for transformix version: 4.400 +.SH SYNOPSIS +\fBtransformix\fP \fImandatory-args\fR [\fIoptional-args\fR] +.SH DESCRIPTION +transformix applies a transform on an input image and/or generates a deformation field. +The transform is specified in the transform\-parameter file. +.PP +.SH OPTIONS +Call transformix from the command line with mandatory arguments: +.TP +\fB\-out\fR output directory +.TP +\fB\-tp\fR transform\-parameter file, only 1 +.PP +Optional extra commands: +.TP +\fB\-in\fR input image to deform +.TP +\fB\-def\fR file containing input\-image points +.IP +the point are transformed according to the specified transform\-parameter file +use "\-def all" to transform all points from the input\-image, which effectively generates a deformation field. +.PP +.TP +\fB\-jac\fR use "\-jac all" to generate an image with the determinant of the spatial Jacobian +.TP +\fB\-jacmat\fR use "\-jacmat all" to generate an image with the spatial Jacobian matrix at each voxel +.TP +\fB\-priority\fR set the process priority to high or belownormal (Windows only) +.TP +\fB\-threads\fR set the maximum number of threads of transformix +At least one of the options "\-in", "\-def", "\-jac", or "\-jacmat" should be given. +.PP +The transform\-parameter file must contain all the information necessary for transformix to run properly. That includes which transform to use, with which parameters, etc. +For a usable transform\-parameter file, see the output of elastix. +.SH "SEE ALSO" +.BR elastix (1) +.PP +Check the website http://elastix.isi.uu.nl, or mail [email protected]. _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
