Author: plessy Date: 2010-12-28 18:05:43 +0000 (Tue, 28 Dec 2010) New Revision: 5629
Modified: trunk/packages/clustalw/trunk/debian/changelog trunk/packages/clustalw/trunk/debian/clustalw.1 trunk/packages/clustalw/trunk/debian/clustalw.1.xml trunk/packages/clustalw/trunk/debian/control trunk/packages/clustalw/trunk/debian/copyright Log: Clustal W is free ! Not uplodading yet due to lack of time and chroot. Modified: trunk/packages/clustalw/trunk/debian/changelog =================================================================== --- trunk/packages/clustalw/trunk/debian/changelog 2010-12-27 16:54:19 UTC (rev 5628) +++ trunk/packages/clustalw/trunk/debian/changelog 2010-12-28 18:05:43 UTC (rev 5629) @@ -1,3 +1,11 @@ +clustalw (1:2.1-2) UNRELEASED; urgency=low + + * New upstream archive, that makes clear the relicensing to LGPL-3+. + * Changed archive area in debian/control. + * Updated license in debian/copyright and debian/clustalw.1* + + -- Charles Plessy <[email protected]> Tue, 28 Dec 2010 18:53:12 +0100 + clustalw (2.1-1) unstable; urgency=low * New upstream version Modified: trunk/packages/clustalw/trunk/debian/clustalw.1 =================================================================== --- trunk/packages/clustalw/trunk/debian/clustalw.1 2010-12-27 16:54:19 UTC (rev 5628) +++ trunk/packages/clustalw/trunk/debian/clustalw.1 2010-12-28 18:05:43 UTC (rev 5629) @@ -2,13 +2,22 @@ .\" Title: CLUSTALW .\" Author: Des Higgins .\" Generator: DocBook XSL Stylesheets v1.75.2 <http://docbook.sf.net/> -.\" Date: 10/14/2009 +.\" Date: 12/28/2010 .\" Manual: Clustal Manual -.\" Source: Clustal 2.0.12 +.\" Source: Clustal 2.1 .\" Language: English .\" -.TH "CLUSTALW" "1" "10/14/2009" "Clustal 2.0.12" "Clustal Manual" +.TH "CLUSTALW" "1" "12/28/2010" "Clustal 2.1" "Clustal Manual" .\" ----------------------------------------------------------------- +.\" * Define some portability stuff +.\" ----------------------------------------------------------------- +.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +.\" http://bugs.debian.org/507673 +.\" http://lists.gnu.org/archive/html/groff/2009-02/msg00013.html +.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +.ie \n(.g .ds Aq \(aq +.el .ds Aq ' +.\" ----------------------------------------------------------------- .\" * set default formatting .\" ----------------------------------------------------------------- .\" disable hyphenation @@ -504,7 +513,7 @@ .PP \fB\-kimura\fR .RS 4 -Use Kimura\'s correction\&. +Use Kimura\*(Aqs correction\&. .RE .PP \fB\-tossgaps\fR @@ -682,49 +691,18 @@ .RE .SH "COPYRIGHT" .br -Copyright \(co 1988\(en2009 Des Higgins, Julie Thompson & Toby Giboson (Clustal) +Copyright \(co 1988\(en2010 Des Higgins, Julie Thompson & Toby Giboson (Clustal) .br -Copyright \(co 2008\(en2009 Charles Plessy (This manpage) +Copyright \(co 2008\(en2010 Charles Plessy (This manpage) .br .PP -The binaries and source code are made available and can be distributed subject to the following conditions: -.sp -.RS 4 -.ie n \{\ -\h'-04'\(bu\h'+03'\c -.\} -.el \{\ -.sp -1 -.IP \(bu 2.3 -.\} -Users are free to redistribute Clustal\ \&W or Clustal\ \&X in it\'s unmodified form as long as it is not for commercial gain\&. -.RE -.sp -.RS 4 -.ie n \{\ -\h'-04'\(bu\h'+03'\c -.\} -.el \{\ -.sp -1 -.IP \(bu 2.3 -.\} -Anyone wishing to redistribute Clustal commercially should contact Toby Gibson at -gib...@embl\&.de -.RE -.sp -.RS 4 -.ie n \{\ -\h'-04'\(bu\h'+03'\c -.\} -.el \{\ -.sp -1 -.IP \(bu 2.3 -.\} -If users make changes/have ideas that they believe would be useful to the broader research community they can send their suggestions to the clustal development team at -clust...@ucd\&.ie -where they will be considered for inclusion in future releases\&. -.RE +This program is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version\&. .PP +This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE\&. See the GNU Lesser General Public License for more details\&. +.PP +You should have received a copy of the GNU Lesser General Public License along with this program\&. If not, see http://www\&.gnu\&.org/licenses/, or on Debian systems, +/usr/share/common\-licenses/LGPL\-3\&. +.PP This manual page and its XML source can be used, modified, and redistributed as if it were in public domain\&. .sp .SH "NOTES" Modified: trunk/packages/clustalw/trunk/debian/clustalw.1.xml =================================================================== --- trunk/packages/clustalw/trunk/debian/clustalw.1.xml 2010-12-27 16:54:19 UTC (rev 5628) +++ trunk/packages/clustalw/trunk/debian/clustalw.1.xml 2010-12-28 18:05:43 UTC (rev 5629) @@ -18,7 +18,7 @@ <!ENTITY dhsurname "Plessy"> <!ENTITY dhemail "[email protected]"> <!ENTITY dhusername "&dhfirstname; &dhsurname;"> - <!ENTITY dhrelease "2.0.12"> + <!ENTITY dhrelease "2.1"> <!ENTITY dhtitle "Clustal Manual"> <!ENTITY dhucpackage "CLUSTALW"> <!ENTITY dhpackage "clustalw"> @@ -60,34 +60,17 @@ </authorgroup> <copyright> <!-- I am unsure of the years, please correct me if I am wrong ! Charles --> - <year>1988–2009</year> + <year>1988–2010</year> <holder>Des Higgins, Julie Thompson & Toby Giboson (&dhproduct;)</holder> </copyright> <copyright> - <year>2008–2009</year> + <year>2008–2010</year> <holder>&dhusername; (This manpage)</holder> </copyright> <legalnotice> - <para> - The binaries and source code are made available and can be distributed subject to the following conditions: - </para> - <itemizedlist> - <listitem> - <para> - Users are free to redistribute Clustal W or Clustal X in it's unmodified form as long as it is not for commercial gain. - </para> - </listitem> - <listitem> - <para> - Anyone wishing to redistribute Clustal commercially should contact Toby Gibson at <email>[email protected]</email> - </para> - </listitem> - <listitem> - <para> - If users make changes/have ideas that they believe would be useful to the broader research community they can send their suggestions to the clustal development team at <email>[email protected]</email> where they will be considered for inclusion in future releases. - </para> - </listitem> - </itemizedlist> + <para>This program is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.</para> + <para>This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.</para> + <para>You should have received a copy of the GNU Lesser General Public License along with this program. If not, see http://www.gnu.org/licenses/, or on Debian systems, <filename>/usr/share/common-licenses/LGPL-3</filename>.</para> </legalnotice> <legalnotice> <para> Modified: trunk/packages/clustalw/trunk/debian/control =================================================================== --- trunk/packages/clustalw/trunk/debian/control 2010-12-27 16:54:19 UTC (rev 5628) +++ trunk/packages/clustalw/trunk/debian/control 2010-12-28 18:05:43 UTC (rev 5629) @@ -1,5 +1,5 @@ Source: clustalw -Section: non-free/science +Section: science Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> DM-Upload-Allowed: yes Modified: trunk/packages/clustalw/trunk/debian/copyright =================================================================== --- trunk/packages/clustalw/trunk/debian/copyright 2010-12-27 16:54:19 UTC (rev 5628) +++ trunk/packages/clustalw/trunk/debian/copyright 2010-12-28 18:05:43 UTC (rev 5629) @@ -1,66 +1,23 @@ -Name : Clustal W -Contact : [email protected] -Source : http://www.clustal.org/download/current/clustalw-2.0.12.tar.gz -Disclamer : - This package is not part of the Debian operating system. The clustalw source - and binary Debian packages are part of the “non-free” area in our archive. The - packages in this area are not part of the Debian system, although they have - been configured for use with Debian. We nevertheless support the use of the - clustalw source and binary Debian packages and provide infrastructure for - non-free packages (such as our bug tracking system and mailing lists). The - licence does not forbid Debian from using autobuilders to create binary - packages. +Source: http://www.clustal.org/download/current/clustalw-2.1.tar.gz -Copyright : © Des Higgins, Julie Thompson and Toby Gibson -Licence : Not for commercial use, No modification of the code. - - Date:29 November 2007 - - The copyright for ClustalW and ClustalX is held by Des Higgins, Julie Thompson - and Toby Gibson - - The binaries and source code are made available and can be distributed subject - to the following conditions: - - Users are free to redistribute ClustalW or ClustalX in it's unmodified form as - long as it is not for commercial gain. - - Anyone wishing to redistribute Clustal commercially should contact Toby Gibson - at [email protected] - - - If users make changes/have ideas that they believe would be useful to the - broader research community they can send their suggestions to the clustal - development team at [email protected] where they will be considered for inclusion - in future releases. - +Files: * +Copyright: © Des Higgins, Julie Thompson and Toby Gibson +Licence: LGPL-3+ + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU Lesser General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU Lesser General Public License for more details. + . + You should have received a copy of the GNU Lesser General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. Comment: - - Frequently asked questions about Clustal licensing? - --------------------------------------------------- - - 1. Do I have to pay to use ClustalW or ClustalX? - No - unless you wish to redistribute Clustal for profit. In this case see question 4. - - 2. Can I redistribute the Clustal binaries and source code? - Yes. We have always wanted to see Clustal have as wide a userbase and - distribution network as possible and are happy to see other sites host copies - of the official Clustal code. - - 3. Can I make changes to the source code? - - You can make changes for your own purposes but you should not redistribute the - changed code. - - 4. I want to include ClustalW/ClustalX in a commercial application who should I contact? - Toby Gibson at [email protected] (also cc [email protected]) - - 5. There is no Clustal distribution for platform X. I have changed the code in - order to compile Clustal on this platform. Can I redistribute it? - - Ideally you should send us a copy of your source code changes as well as a - binary. We will include it in our contributed binaries section on our FTP site - along with an acknowledgement of your contribution. + On Debian systems, you can read the full text of the GNU Lesser General Public + License in ‘/usr/share/common-licenses/LGPL-3’. Files: debian/* Copyright: © 1998-1999 Stephane Bortzmeyer <[email protected]> @@ -70,7 +27,7 @@ © 2006 Kai Hendry <[email protected]> © 2007 Nelson A. de Oliveira <[email protected]> © 2003-2008 Steffen Möller <[email protected]> - © 2007-2009 Charles Plessy <[email protected]> + © 2007-2010 Charles Plessy <[email protected]> © 2008 David Paleino <[email protected]> Licence: Unclear The licence of the earlier works was never stated. Some works have been @@ -78,7 +35,6 @@ but authors are left in the list of copyright holders by courtesy. The work of Charles Plessy and Steffen Möller can be treated as if it were public domain. Comment: I have received the following message from Des Higgins. -- Charles Plessy - "We are happy to give the Debian team permission to modify ClustalW 2 and ClustalX 2 code and redistribute the binaries as long as those modifications do not alter the algorithmic core, i.e. only affect @@ -86,7 +42,7 @@ LICENSE file into your package." Files: debian/clustalw.1.xml, debian/clustalw.1 -Copyright: © 2008 Charles Plessy <[email protected]> +Copyright: © 2008–10 Charles Plessy <[email protected]> Licence: Public Domain The manual page and its XML source can be used, modified, and redistributed as if it were in public domain. _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
