Author: moeller Date: 2011-02-05 17:15:41 +0000 (Sat, 05 Feb 2011) New Revision: 5908
Added: trunk/packages/R/r-other-genabel/trunk/debian/TODO trunk/packages/R/r-other-genabel/trunk/debian/source/ trunk/packages/R/r-other-genabel/trunk/debian/source/format Modified: trunk/packages/R/r-other-genabel/trunk/debian/changelog trunk/packages/R/r-other-genabel/trunk/debian/control trunk/packages/R/r-other-genabel/trunk/debian/copyright trunk/packages/R/r-other-genabel/trunk/debian/rules trunk/packages/R/r-other-genabel/trunk/debian/watch Log: GenABEL is now in CRAN, bump from 1.4-0 to 1.6-4. Changed to source/format 3.0 (quilt). Added: trunk/packages/R/r-other-genabel/trunk/debian/TODO =================================================================== --- trunk/packages/R/r-other-genabel/trunk/debian/TODO (rev 0) +++ trunk/packages/R/r-other-genabel/trunk/debian/TODO 2011-02-05 17:15:41 UTC (rev 5908) @@ -0,0 +1,14 @@ + +How should this be done most efficiently? + +W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/exdata/srphenos.dat +W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/exdata/map.18 +W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/exdata/pedin.18 +W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/doc/index.html +W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/doc/GenABEL-manual.pdf +W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/doc/ABEL-tutorial.pdf +W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/exdata/srgenos.dat +W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/exdata/chr18.raw +W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/exdata/srgenos.raw +W: r-cran-genabel: executable-not-elf-or-script ./usr/lib/R/site-library/GenABEL/exdata/phenos.18 + Modified: trunk/packages/R/r-other-genabel/trunk/debian/changelog =================================================================== --- trunk/packages/R/r-other-genabel/trunk/debian/changelog 2011-02-05 16:48:57 UTC (rev 5907) +++ trunk/packages/R/r-other-genabel/trunk/debian/changelog 2011-02-05 17:15:41 UTC (rev 5908) @@ -1,3 +1,13 @@ +r-cran-genabel (1.6-4-1) unstable; urgency=low + + * New upstream release. + * The package has now arrived in CRAN and is taken from there, + which according to the R policy is also reflected by the name change. + * Switch to source/format 3.0 (quilt) + * Bumped policy-standard to 3.9.1. + + -- Steffen Moeller <[email protected]> Sat, 05 Feb 2011 18:06:24 +0100 + r-other-genabel (1.4-0-1) unstable; urgency=low * Initial release (Closes: #492044). Modified: trunk/packages/R/r-other-genabel/trunk/debian/control =================================================================== --- trunk/packages/R/r-other-genabel/trunk/debian/control 2011-02-05 16:48:57 UTC (rev 5907) +++ trunk/packages/R/r-other-genabel/trunk/debian/control 2011-02-05 17:15:41 UTC (rev 5908) @@ -1,15 +1,17 @@ -Source: r-other-genabel +Source: r-cran-genabel Section: science Priority: optional Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Steffen Moeller <[email protected]> Build-Depends: debhelper (>= 5.0.0), cdbs, r-base-dev (>= 2.7.0~20080408), r-recommended, r-cran-genetics, r-cran-haplo.stats, r-cran-qvalue -Standards-Version: 3.8.0 +Standards-Version: 3.9.1 Homepage: http://mga.bionet.nsc.ru/nlru/GenABEL/ -Package: r-other-genabel +Package: r-cran-genabel Architecture: any Depends: ${shlibs:Depends}, r-base-core (>= 2.7.0), r-recommended, r-cran-genetics, r-cran-haplo.stats, r-cran-qvalue +Provides: r-other-genabel +Conflicts: r-other-genabel Description: GNU R package for genome-wide SNP association analysis The package offers the R library GenABEL for the hunt of genetic contributions to a disease (or any other pheonypical trait) by so called genome-wide Modified: trunk/packages/R/r-other-genabel/trunk/debian/copyright =================================================================== --- trunk/packages/R/r-other-genabel/trunk/debian/copyright 2011-02-05 16:48:57 UTC (rev 5907) +++ trunk/packages/R/r-other-genabel/trunk/debian/copyright 2011-02-05 17:15:41 UTC (rev 5908) @@ -1,20 +1,21 @@ -This is the Debian GNU/Linux r-other-geneabel package of -GenABEL, performing statistical analyses of genome-wide SNP -association studies. GenABEL is maintained by Yurii Aulchenko +This is the Debian GNU/Linux r-cran-genabel (formerly r-other-geneabel) +package of GenABEL, performing statistical analyses of genome-wide +SNP association studies. GenABEL is maintained by Yurii Aulchenko <[email protected]>. It was written by Yurii Aulchenko, Maksim Struchalin, with contributions from Stephan Ripke, Terry Therneau and Toby Johnson. +This Debian package was created by Steffen Moeller <[email protected]>, +based on work for the r-cran-rodbc package of Dirk Eddelbuettel +<[email protected]>. The code associated with packaging is distributed +under the terms of the GPL version 2 or later. -This package was created by Steffen Moeller <[email protected]>, based on -work for the r-cran-rodbc package of Dirk Eddelbuettel <[email protected]>. +The sources were previously downloaded from http://mga.bionet.nsc.ru/nlru/GenABEL +and now from the CRAN (cran.r-project.org) repository. -The sources were downloaded from http://mga.bionet.nsc.ru/nlru/GenABEL. - The package was renamed from its upstream name 'GenABEL' to -'r-other-genabel' to highlight the fact that is it a package for R -outside the CRAN or other established archives, and to match Debian's -convention of lowercase package names. +'r-cran-genabel' to highlight the fact that is it a package for R +in CRAN, and to match Debian's convention of lowercase package names. GenABEL is copyright 2006-2008 of Yurii Aulchenko, Maksim Struchalin, with contributions from Stephan Ripke, Terry Therneau and Toby Johnson and Modified: trunk/packages/R/r-other-genabel/trunk/debian/rules =================================================================== --- trunk/packages/R/r-other-genabel/trunk/debian/rules 2011-02-05 16:48:57 UTC (rev 5907) +++ trunk/packages/R/r-other-genabel/trunk/debian/rules 2011-02-05 17:15:41 UTC (rev 5908) @@ -3,5 +3,5 @@ # debian/rules file for the Debian/GNU Linux r-cran-qtl package # Copyright 2003-2006 by Dirk Eddelbuettel <[email protected]> -debRreposname=other +debRreposname=cran include /usr/share/R/debian/r-cran.mk Added: trunk/packages/R/r-other-genabel/trunk/debian/source/format =================================================================== --- trunk/packages/R/r-other-genabel/trunk/debian/source/format (rev 0) +++ trunk/packages/R/r-other-genabel/trunk/debian/source/format 2011-02-05 17:15:41 UTC (rev 5908) @@ -0,0 +1 @@ +3.0 (quilt) Modified: trunk/packages/R/r-other-genabel/trunk/debian/watch =================================================================== --- trunk/packages/R/r-other-genabel/trunk/debian/watch 2011-02-05 16:48:57 UTC (rev 5907) +++ trunk/packages/R/r-other-genabel/trunk/debian/watch 2011-02-05 17:15:41 UTC (rev 5908) @@ -1,3 +1,5 @@ version=3 -http://mga.bionet.nsc.ru/nlru/GenABEL/GenABEL_(.*)\.tar\.gz +#http://mga.bionet.nsc.ru/nlru/GenABEL/GenABEL_(.*)\.tar\.gz +# The package has now arrived in CRAN +http://cran.r-project.org/src/contrib/GenABEL_(.*)\.tar\.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
