Author: malex-guest Date: 2011-02-16 10:13:54 +0000 (Wed, 16 Feb 2011) New Revision: 5997
Added: trunk/packages/vienna-rna/trunk/debian/b2ct.1 trunk/packages/vienna-rna/trunk/debian/ct2b.1 trunk/packages/vienna-rna/trunk/debian/dpzoom.1 trunk/packages/vienna-rna/trunk/debian/popt.1 Log: added missing manual pages , as source used project's webpage & source . Added: trunk/packages/vienna-rna/trunk/debian/b2ct.1 =================================================================== --- trunk/packages/vienna-rna/trunk/debian/b2ct.1 (rev 0) +++ trunk/packages/vienna-rna/trunk/debian/b2ct.1 2011-02-16 10:13:54 UTC (rev 5997) @@ -0,0 +1,25 @@ +.TH B2CT "1" User Contributed Perl Documentation + +.SH NAME +b2ct \- converts the bracket notation produced by RNAfold into an '.ct' file + +.SH SYNOPSIS +b2ct < structure_file > ct_file.ct + +.SH DESCRIPTION +This program converts the bracket notation for RNA secondary structures +produced by RNAfold to .ct files used by Michael Zukers Program. + +In conection with RNAfold it can be used as + RNAfold < sequence_file | b2ct > ct_file.ct + +.SH SEE ALSO + +RNAFOld(1) + +.SH AUTHOR + Ivo L. Hofacker <[email protected]> + + + +perl v5.10.1 2011-02-01 Added: trunk/packages/vienna-rna/trunk/debian/ct2b.1 =================================================================== --- trunk/packages/vienna-rna/trunk/debian/ct2b.1 (rev 0) +++ trunk/packages/vienna-rna/trunk/debian/ct2b.1 2011-02-16 10:13:54 UTC (rev 5997) @@ -0,0 +1,23 @@ +.TH CT2B "1" User Contributed Perl Documentation + +.SH NAME +ct2b \- converts '.ct' files to '.struct' files. + +.SH SYNOPSIS +ct2b foo.ct > foo.struct + +.SH DESCRIPTION +This program produces dot bracket notation of an RNA secondary +structure from Michael Zuker's '.ct' file. + +.SH SEE ALSO + +RNAFOld(1), b2ct(1) + +.SH AUTHOR + Ivo L. Hofacker <[email protected]> + + + +perl v5.10.1 2011-02-01 + Added: trunk/packages/vienna-rna/trunk/debian/dpzoom.1 =================================================================== --- trunk/packages/vienna-rna/trunk/debian/dpzoom.1 (rev 0) +++ trunk/packages/vienna-rna/trunk/debian/dpzoom.1 2011-02-16 10:13:54 UTC (rev 5997) @@ -0,0 +1,22 @@ +.TH DPZOOM "1" User Contributed Perl Documentation + +.SH NAME +dpzoom \- zoom into a PostScript dot plot produced by RNAfold or RNAalifold + +.SH SYNOPSIS +dpzoom [-f first] [-l last] [dp_file] + +.SH DESCRIPTION +Reads a postscript dot plot as produced by RNAfold -p, and extracts the dot plot +for a smaller subsequence. + +.SH SEE ALSO + +RNAFOld(1), RNAalifold(1) + +.SH AUTHOR + Ivo L. Hofacker <[email protected]> + + + +perl v5.10.1 2011-02-01 Added: trunk/packages/vienna-rna/trunk/debian/popt.1 =================================================================== --- trunk/packages/vienna-rna/trunk/debian/popt.1 (rev 0) +++ trunk/packages/vienna-rna/trunk/debian/popt.1 2011-02-16 10:13:54 UTC (rev 5997) @@ -0,0 +1,27 @@ +.TH POPT "1" User Contributed Perl Documentation + +.SH NAME +popt \- extract Michael Zuker's p-optimal folds from subopt output. + +.SH SYNOPSIS +RNAsubopt -s < seq | popt + +.SH DESCRIPTION +This program extracts Michael Zuker's p-optimal folds from subopt output. +prints p-optimal structures followed by the list of pairs +with respect to which they are optimal. +Input must be sorted by energy! + +In conection with RNAfold it can be used as + RNAfold < sequence_file | b2ct > ct_file.ct + +.SH SEE ALSO + +RNAsubopt(1) + +.SH AUTHOR + Ivo L. Hofacker <[email protected]>, Walter Fontana + + + +perl v5.10.1 2011-02-01 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
