Author: moeller Date: 2011-02-17 11:16:41 +0000 (Thu, 17 Feb 2011) New Revision: 6012
Modified: trunk/packages/vienna-rna/trunk/debian/control Log: Fine-tuning of debian/control (we -> It, readability). Modified: trunk/packages/vienna-rna/trunk/debian/control =================================================================== --- trunk/packages/vienna-rna/trunk/debian/control 2011-02-17 10:28:29 UTC (rev 6011) +++ trunk/packages/vienna-rna/trunk/debian/control 2011-02-17 11:16:41 UTC (rev 6012) @@ -24,14 +24,17 @@ in Vienna. . RNA secondary structure prediction through energy minimization is the - most used function in the package. We provide three kinds of dynamic - programming algorithms for structure prediction: the minimum free energy - algorithm of (Zuker & Stiegler 1981) which yields a single optimal - structure, the partition function algorithm of (McCaskill 1990) which - calculates base pair probabilities in the thermodynamic ensemble, and - the suboptimal folding algorithm of (Wuchty et.al 1999) which generates - all suboptimal structures within a given energy range of the optimal - energy. For secondary structure comparison, the package contains several + most used function in the package. It provides three kinds of dynamic + programming algorithms for structure prediction: + * the minimum free energy algorithm of (Zuker & Stiegler 1981) which + yields a single optimal structure, + * the partition function algorithm of (McCaskill 1990) which calculates + base pair probabilities in the thermodynamic ensemble, and the + suboptimal folding algorithm of (Wuchty et.al 1999) which generates + all suboptimal structures within a given energy range of the optimal + energy. + . + For secondary structure comparison, the package contains several measures of distance (dissimilarities) using either string alignment or tree-editing (Shapiro & Zhang 1990). Finally, we provide an algorithm to design sequences with a predefined structure (inverse folding). _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
