Author: moeller Date: 2011-03-03 14:20:41 +0000 (Thu, 03 Mar 2011) New Revision: 6157
Added: trunk/packages/wgs-assembler/trunk/debian/wgs-assembler.dirs Removed: trunk/packages/wgs-assembler/trunk/debian/README.source Modified: trunk/packages/wgs-assembler/trunk/debian/ trunk/packages/wgs-assembler/trunk/debian/README.Debian trunk/packages/wgs-assembler/trunk/debian/control trunk/packages/wgs-assembler/trunk/debian/rules trunk/packages/wgs-assembler/trunk/debian/watch Log: Builds for me. Property changes on: trunk/packages/wgs-assembler/trunk/debian ___________________________________________________________________ Added: mergeWithUpstream + 1 Modified: trunk/packages/wgs-assembler/trunk/debian/README.Debian =================================================================== --- trunk/packages/wgs-assembler/trunk/debian/README.Debian 2011-03-03 13:37:08 UTC (rev 6156) +++ trunk/packages/wgs-assembler/trunk/debian/README.Debian 2011-03-03 14:20:41 UTC (rev 6157) @@ -1,6 +1,14 @@ wgs-assembler for Debian ------------------------ -<possible notes regarding this package - if none, delete this file> +This package is still worked on. To do: - -- root <[email protected]> Sat, 29 Jan 2011 16:40:00 +0000 + * watch file does not yet allow downloads + * kmer should become a binary on its own + +Upstream could need some help with shared libraries, and possibly +also with other things. While gaining experience with it all, +the package shall reside in the experimental section as a start. + + -- William Spooner <[email protected]> Sat, 29 Jan 2011 16:40:00 +0000 + Steffen Moeller <[email protected]> Deleted: trunk/packages/wgs-assembler/trunk/debian/README.source =================================================================== --- trunk/packages/wgs-assembler/trunk/debian/README.source 2011-03-03 13:37:08 UTC (rev 6156) +++ trunk/packages/wgs-assembler/trunk/debian/README.source 2011-03-03 14:20:41 UTC (rev 6157) @@ -1,9 +0,0 @@ -wgs-assembler for Debian ------------------------- - -<this file describes information about the source package, see Debian policy -manual section 4.14. You WILL either need to modify or delete this file> - - - - Modified: trunk/packages/wgs-assembler/trunk/debian/control =================================================================== --- trunk/packages/wgs-assembler/trunk/debian/control 2011-03-03 13:37:08 UTC (rev 6156) +++ trunk/packages/wgs-assembler/trunk/debian/control 2011-03-03 14:20:41 UTC (rev 6157) @@ -13,6 +13,11 @@ Package: wgs-assembler Architecture: any Depends: ${shlibs:Depends}, ${misc:Depends} -Description: Genome DNA sequence assembler - Genome DNA assembler originally developed by Celera, but since open-sourced - and extended to provide hybrid assemblies across an expanding number of sequence types. +Description: Whole-Genome DNA sequence assembler + WGS stands for 'whole genome shotgun' and refers to the concept + to perform an assembly of large genomes from many smallish random + reads. + . + The assembler was originally developed by Celera and is of strong + historic value. I was open-sourced and since extended to provide + hybrid assemblies across an expanding number of sequence types. Modified: trunk/packages/wgs-assembler/trunk/debian/rules =================================================================== --- trunk/packages/wgs-assembler/trunk/debian/rules 2011-03-03 13:37:08 UTC (rev 6156) +++ trunk/packages/wgs-assembler/trunk/debian/rules 2011-03-03 14:20:41 UTC (rev 6157) @@ -13,11 +13,22 @@ dh $@ override_dh_auto_build: + export PATH=$$PATH:. ; \ + cd kmer/build ; \ + ln -s ../Make.compilers . ; \ + make makepath cd kmer; \ - ln -s build/makepath.pl makepath ; \ + ln -sf build/makepath.pl build/makepath . ; \ sh configure.sh; \ - gmake install; \ - cd ../src; \ - gmake; \ - cd .. + make install + ln -s kmer/Linux-* kmer/installdir + $(MAKE) -C src + ln -s Linux-* installdir +override_dh_install: + cp installdir/bin/* $(CURDIR)/debian/wgs-assembler/usr/bin/ + cp kmer/installdir/bin/* $(CURDIR)/debian/wgs-assembler/usr/bin/ + cp kmer/installdir/include/* $(CURDIR)/debian/wgs-assembler/usr/include/kmer/ + +clean:: + rm -rf kmer/makepath.pl kmer/installdir kmer/build/Make.compilers installdir Modified: trunk/packages/wgs-assembler/trunk/debian/watch =================================================================== --- trunk/packages/wgs-assembler/trunk/debian/watch 2011-03-03 13:37:08 UTC (rev 6156) +++ trunk/packages/wgs-assembler/trunk/debian/watch 2011-03-03 14:20:41 UTC (rev 6157) @@ -1,2 +1,2 @@ version=3 -http://sf.net/wgs-assembler/wgs-([\d\.]+)\.tar\.bz2 +http://sf.net/wgs-assembler/wgs-([\d\.]+)\.tar\.bz Added: trunk/packages/wgs-assembler/trunk/debian/wgs-assembler.dirs =================================================================== --- trunk/packages/wgs-assembler/trunk/debian/wgs-assembler.dirs (rev 0) +++ trunk/packages/wgs-assembler/trunk/debian/wgs-assembler.dirs 2011-03-03 14:20:41 UTC (rev 6157) @@ -0,0 +1,2 @@ +usr/include/kmer +usr/bin _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
