Author: malex-guest Date: 2011-03-07 12:28:29 +0000 (Mon, 07 Mar 2011) New Revision: 6172
Added: trunk/packages/seq-gen/ trunk/packages/seq-gen/trunk/ trunk/packages/seq-gen/trunk/debian/ trunk/packages/seq-gen/trunk/debian/README.Debian trunk/packages/seq-gen/trunk/debian/README.source trunk/packages/seq-gen/trunk/debian/changelog trunk/packages/seq-gen/trunk/debian/compat trunk/packages/seq-gen/trunk/debian/control trunk/packages/seq-gen/trunk/debian/copyright trunk/packages/seq-gen/trunk/debian/docs trunk/packages/seq-gen/trunk/debian/get-orig-source trunk/packages/seq-gen/trunk/debian/rules trunk/packages/seq-gen/trunk/debian/seq-gen-doc.docs trunk/packages/seq-gen/trunk/debian/seq-gen-doc.install trunk/packages/seq-gen/trunk/debian/seq-gen.docs trunk/packages/seq-gen/trunk/debian/seq-gen.examples trunk/packages/seq-gen/trunk/debian/seq-gen.install trunk/packages/seq-gen/trunk/debian/source/ trunk/packages/seq-gen/trunk/debian/source/format trunk/packages/seq-gen/trunk/debian/watch Log: initial upload for seq-gen Added: trunk/packages/seq-gen/trunk/debian/README.Debian =================================================================== --- trunk/packages/seq-gen/trunk/debian/README.Debian (rev 0) +++ trunk/packages/seq-gen/trunk/debian/README.Debian 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1,6 @@ +seq-gen for Debian +------------------ + +<possible notes regarding this package - if none, delete this file> + + -- Alex Mestiashvili <[email protected]> Thu, 03 Mar 2011 14:58:34 +0000 Added: trunk/packages/seq-gen/trunk/debian/README.source =================================================================== --- trunk/packages/seq-gen/trunk/debian/README.source (rev 0) +++ trunk/packages/seq-gen/trunk/debian/README.source 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1,9 @@ +seq-gen for Debian +------------------ + +<this file describes information about the source package, see Debian policy +manual section 4.14. You WILL either need to modify or delete this file> + + + + Added: trunk/packages/seq-gen/trunk/debian/changelog =================================================================== --- trunk/packages/seq-gen/trunk/debian/changelog (rev 0) +++ trunk/packages/seq-gen/trunk/debian/changelog 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1,5 @@ +seq-gen (1.3.2-1) unstable; urgency=low + + * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP> + + -- Alex Mestiashvili <[email protected]> Thu, 03 Mar 2011 14:58:34 +0000 Added: trunk/packages/seq-gen/trunk/debian/compat =================================================================== --- trunk/packages/seq-gen/trunk/debian/compat (rev 0) +++ trunk/packages/seq-gen/trunk/debian/compat 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1 @@ +7 Added: trunk/packages/seq-gen/trunk/debian/control =================================================================== --- trunk/packages/seq-gen/trunk/debian/control (rev 0) +++ trunk/packages/seq-gen/trunk/debian/control 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1,30 @@ +Source: seq-gen +Section: unknown +Priority: extra +Maintainer: Alex Mestiashvili <[email protected]> +Build-Depends: debhelper (>= 7.0.50~) +Standards-Version: 3.9.1 +Homepage: http://tree.bio.ed.ac.uk/software/seqgen/ +#Vcs-Git: git://git.debian.org/collab-maint/seq-gen.git +#Vcs-Browser: http://git.debian.org/?p=collab-maint/seq-gen.git;a=summary + +Package: seq-gen +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: simulate the evolution of nucleotide or amino acid sequences + Seq-Gen is a program that will simulate the evolution of nucleotide + or amino acid sequences along a phylogeny, using common models of the + substitution process. A range of models of molecular evolution are + implemented including the general reversible model. State frequencies + and other parameters of the model may be given and site-specific rate + heterogeneity may also be incorporated in a number of ways. Any number + of trees may be read in and the program will produce any number of data + sets for each tree. Thus large sets of replicate simulations can be + easily created. It has been designed to be a general purpose simulator + that incorporates most of the commonly used + (and computationally tractable) models of molecular sequence evolution. + +Package: seq-gen-doc +Architecture: all +Description: documentation for seq-gen + Added: trunk/packages/seq-gen/trunk/debian/copyright =================================================================== --- trunk/packages/seq-gen/trunk/debian/copyright (rev 0) +++ trunk/packages/seq-gen/trunk/debian/copyright 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1,40 @@ +Format: http://dep.debian.net/deps/dep5 +Upstream-Name: seq-gen +Source: <url://example.com> + +Files: * +Copyright: <years> <put author's name and email here> + <years> <likewise for another author> +License: GPL-3.0+ + +Files: debian/* +Copyright: 2011 Alex Mestiashvili <[email protected]> +License: GPL-3.0+ + +License: GPL-3.0+ + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + . + On Debian systems, the complete text of the GNU General + Public License version 3 can be found in "/usr/share/common-licenses/GPL-3". + +# Please choose a license for your packaging work. If the program you package +# uses a mainstream license, using the same license is the safest choice. +# Please avoid to pick license terms that are more restrictive than the +# packaged work, as it may make Debian's contributions unacceptable upstream. +# If you just want it to be GPL version 3, leave the following line in. + +and is licensed under the GPL version 3, see above. + +# Please also look if there are files or directories which have a +# different copyright/license attached and list them here. Added: trunk/packages/seq-gen/trunk/debian/docs =================================================================== --- trunk/packages/seq-gen/trunk/debian/docs (rev 0) +++ trunk/packages/seq-gen/trunk/debian/docs 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1 @@ +README Added: trunk/packages/seq-gen/trunk/debian/get-orig-source =================================================================== --- trunk/packages/seq-gen/trunk/debian/get-orig-source (rev 0) +++ trunk/packages/seq-gen/trunk/debian/get-orig-source 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1,33 @@ +#!/bin/bash + +PKG=`dpkg-parsechangelog | awk '/Source:/ {print $2}'` + +if ! echo $@ | grep -q upstream-version ; then + VERSION=`dpkg-parsechangelog | awk '/^Version:/ { print $2 }' | sed 's/\([0-9\.]\+\)-[0-9]\+$/\1/'` +else + VERSION=`echo $@ | sed 's?^.*--upstream-version \([0-9.]\+\) .*download.html.*?\1?'` + if echo "$VERSION" | grep -q "upstream-version" ; then + echo "Unable to parse version number" + exit + fi +fi + +mkdir -p ../tarballs + +DLOADID=`grep "click here to start the downloa" ../download.html | awk -F'<a href="' '{split($2,array,"\">");print array[1]}'` +SITE=`awk -F"\/" '/http/{print $1"/"$2"/"$3"/"}' debian/watch` +wget $SITE/$DLOADID -O ../tarballs/${PKG}_${VERSION}.tgz + +rm -f ../download.html + +mkdir ../tarballs/${PKG}-${VERSION} + +tar -xvzf ../tarballs/${PKG}_${VERSION}.tgz -C ../tarballs/${PKG}-${VERSION}/ --strip-components=1 + +cd ../tarballs +GZIP="--best --no-name" tar -czf "$PKG"_"$VERSION".orig.tar.gz "$PKG"-"$VERSION" +rm -rf "$PKG"-"$VERSION" +rm -f "$PKG"_"$VERSION.tgz" + +echo `tput bold` "${PKG}_${VERSION}.orig.tar.gz is located in ../tarballs" +tput sgr0 Property changes on: trunk/packages/seq-gen/trunk/debian/get-orig-source ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/seq-gen/trunk/debian/rules =================================================================== --- trunk/packages/seq-gen/trunk/debian/rules (rev 0) +++ trunk/packages/seq-gen/trunk/debian/rules 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1,12 @@ +#!/usr/bin/make -f +# -*- makefile -*- + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +# This has to be exported to make some magic below work. +export DH_OPTIONS + + +%: + dh $@ --sourcedirectory=source Property changes on: trunk/packages/seq-gen/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/seq-gen/trunk/debian/seq-gen-doc.docs =================================================================== --- trunk/packages/seq-gen/trunk/debian/seq-gen-doc.docs (rev 0) +++ trunk/packages/seq-gen/trunk/debian/seq-gen-doc.docs 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1 @@ +#DOCS# Added: trunk/packages/seq-gen/trunk/debian/seq-gen-doc.install =================================================================== --- trunk/packages/seq-gen/trunk/debian/seq-gen-doc.install (rev 0) +++ trunk/packages/seq-gen/trunk/debian/seq-gen-doc.install 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1 @@ +#DOCS# Added: trunk/packages/seq-gen/trunk/debian/seq-gen.docs =================================================================== --- trunk/packages/seq-gen/trunk/debian/seq-gen.docs (rev 0) +++ trunk/packages/seq-gen/trunk/debian/seq-gen.docs 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1 @@ +README Added: trunk/packages/seq-gen/trunk/debian/seq-gen.examples =================================================================== --- trunk/packages/seq-gen/trunk/debian/seq-gen.examples (rev 0) +++ trunk/packages/seq-gen/trunk/debian/seq-gen.examples 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1 @@ +examples/* Added: trunk/packages/seq-gen/trunk/debian/seq-gen.install =================================================================== --- trunk/packages/seq-gen/trunk/debian/seq-gen.install (rev 0) +++ trunk/packages/seq-gen/trunk/debian/seq-gen.install 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1 @@ +source/seq-gen /usr/bin/ Added: trunk/packages/seq-gen/trunk/debian/source/format =================================================================== --- trunk/packages/seq-gen/trunk/debian/source/format (rev 0) +++ trunk/packages/seq-gen/trunk/debian/source/format 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/seq-gen/trunk/debian/watch =================================================================== --- trunk/packages/seq-gen/trunk/debian/watch (rev 0) +++ trunk/packages/seq-gen/trunk/debian/watch 2011-03-07 12:28:29 UTC (rev 6172) @@ -0,0 +1,15 @@ +# Example watch control file for uscan +# Rename this file to "watch" and then you can run the "uscan" command +# to check for upstream updates and more. +# See uscan(1) for format + +# Compulsory line, this is a version 3 file +version=3 + + +http://tree.bio.ed.ac.uk/software/seqgen \ + /download\.html\?name=seqgen&version=v(.*)&id=41&num=1 \ + debian debian/get-orig-source + + + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
