Author: plessy Date: 2011-03-21 23:17:26 +0000 (Mon, 21 Mar 2011) New Revision: 6364
Added: trunk/packages/squizz/trunk/debian/patches/correct-manpages-section.patch trunk/packages/squizz/trunk/debian/patches/disable-swissprot-test.patch Removed: trunk/packages/squizz/trunk/debian/patches/debianpackaging Modified: trunk/packages/squizz/trunk/debian/changelog trunk/packages/squizz/trunk/debian/patches/series Log: Split patches for better readability. Modified: trunk/packages/squizz/trunk/debian/changelog =================================================================== --- trunk/packages/squizz/trunk/debian/changelog 2011-03-21 23:07:53 UTC (rev 6363) +++ trunk/packages/squizz/trunk/debian/changelog 2011-03-21 23:17:26 UTC (rev 6364) @@ -1,3 +1,11 @@ +squizz (0.99a-2) UNRELEASED; urgency=low + + * Split debian/patches/debianpackaging into: + debian/patches/correct-manpages-section.patch and + debian/patches/disable-swissprot-test.patch for better readability. + + -- Charles Plessy <[email protected]> Tue, 22 Mar 2011 07:50:44 +0900 + squizz (0.99a-1) unstable; urgency=low * Initial release (Closes: #618689) Copied: trunk/packages/squizz/trunk/debian/patches/correct-manpages-section.patch (from rev 6361, trunk/packages/squizz/trunk/debian/patches/debianpackaging) =================================================================== --- trunk/packages/squizz/trunk/debian/patches/correct-manpages-section.patch (rev 0) +++ trunk/packages/squizz/trunk/debian/patches/correct-manpages-section.patch 2011-03-21 23:17:26 UTC (rev 6364) @@ -0,0 +1,27 @@ +Debian packaging patch, 21/03/2011 Olivier Sallou <[email protected]> +--- a/doc/alifmt.man ++++ b/doc/alifmt.man +@@ -128,8 +128,8 @@ + .rm #[ #] #H #V #F C + .\" ======================================================================== + .\" +-.IX Title "ALIFMT 1" +-.TH ALIFMT 1 "2009-05-19" "Unix" "User Manuals" ++.IX Title "ALIFMT 5" ++.TH ALIFMT 5 "2009-05-19" "Unix" "User Manuals" + .SH "NAME" + .IP "\fBalifmt\fR \- Aligned sequences formats" 4 + .IX Item "alifmt - Aligned sequences formats" +--- a/doc/seqfmt.man ++++ b/doc/seqfmt.man +@@ -128,8 +128,8 @@ + .rm #[ #] #H #V #F C + .\" ======================================================================== + .\" +-.IX Title "SEQFMT 1" +-.TH SEQFMT 1 "2009-05-19" "Unix" "User Manuals" ++.IX Title "SEQFMT 5" ++.TH SEQFMT 5 "2009-05-19" "Unix" "User Manuals" + .SH "NAME" + .IP "\fBseqfmt\fR \- Sequences formats" 4 + .IX Item "seqfmt - Sequences formats" Deleted: trunk/packages/squizz/trunk/debian/patches/debianpackaging =================================================================== --- trunk/packages/squizz/trunk/debian/patches/debianpackaging 2011-03-21 23:07:53 UTC (rev 6363) +++ trunk/packages/squizz/trunk/debian/patches/debianpackaging 2011-03-21 23:17:26 UTC (rev 6364) @@ -1,91 +0,0 @@ -Debian packaging patch, 21/03/2011 Olivier Sallou <[email protected]> ---- a/doc/alifmt.man -+++ b/doc/alifmt.man -@@ -128,8 +128,8 @@ - .rm #[ #] #H #V #F C - .\" ======================================================================== - .\" --.IX Title "ALIFMT 1" --.TH ALIFMT 1 "2009-05-19" "Unix" "User Manuals" -+.IX Title "ALIFMT 5" -+.TH ALIFMT 5 "2009-05-19" "Unix" "User Manuals" - .SH "NAME" - .IP "\fBalifmt\fR \- Aligned sequences formats" 4 - .IX Item "alifmt - Aligned sequences formats" ---- a/doc/seqfmt.man -+++ b/doc/seqfmt.man -@@ -128,8 +128,8 @@ - .rm #[ #] #H #V #F C - .\" ======================================================================== - .\" --.IX Title "SEQFMT 1" --.TH SEQFMT 1 "2009-05-19" "Unix" "User Manuals" -+.IX Title "SEQFMT 5" -+.TH SEQFMT 5 "2009-05-19" "Unix" "User Manuals" - .SH "NAME" - .IP "\fBseqfmt\fR \- Sequences formats" 4 - .IX Item "seqfmt - Sequences formats" ---- a/test/Makefile.am -+++ b/test/Makefile.am -@@ -4,7 +4,7 @@ - - TESTS_ALIS = clustal.sh mega.sh msf.sh nexus.sh phylipi.sh phylips.sh \ - stockholm.sh --TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh sprot.sh -+TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh - - XFAIL_TESTS = - -@@ -16,6 +16,6 @@ - SEQS = sequence/embl.seq sequence/fasta.seq sequence/gde.seq \ - sequence/genbank.seq sequence/genpept.seq sequence/gcg.seq \ - sequence/ig.seq sequence/nbrf.seq sequence/pir.seq sequence/raw.seq \ -- sequence/refseqn.seq sequence/refseqp.seq sequence/sprot.seq -+ sequence/refseqn.seq sequence/refseqp.seq - - EXTRA_DIST = $(TESTS) $(DATAS) ---- a/test/Makefile.in -+++ b/test/Makefile.in -@@ -178,7 +178,7 @@ - TESTS_ALIS = clustal.sh mega.sh msf.sh nexus.sh phylipi.sh phylips.sh \ - stockholm.sh - --TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh sprot.sh -+TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh - DATAS = $(ALIS) $(SEQS) - ALIS = align/clustal.seq align/fasta.seq align/mega.seq align/msf.seq \ - align/nexusi.seq align/phylipi.seq align/phylips.seq align/stock.seq -@@ -186,7 +186,7 @@ - SEQS = sequence/embl.seq sequence/fasta.seq sequence/gde.seq \ - sequence/genbank.seq sequence/genpept.seq sequence/gcg.seq \ - sequence/ig.seq sequence/nbrf.seq sequence/pir.seq sequence/raw.seq \ -- sequence/refseqn.seq sequence/refseqp.seq sequence/sprot.seq -+ sequence/refseqn.seq sequence/refseqp.seq - - EXTRA_DIST = $(TESTS) $(DATAS) - all: all-am ---- a/test/convseq.sh -+++ b/test/convseq.sh -@@ -7,7 +7,7 @@ - - ## Sequence files location - seqdir=$srcdir/sequence --seqlist='embl.seq fasta.seq gcg.seq gde.seq genbank.seq genpept.seq ig.seq nbrf.seq pir.seq raw.seq refseqn.seq refseqp.seq sprot.seq' -+seqlist='embl.seq fasta.seq gcg.seq gde.seq genbank.seq genpept.seq ig.seq nbrf.seq pir.seq raw.seq refseqn.seq refseqp.seq' - - ## Checks EMBL-like sequence - for f in $seqlist; do ---- a/test/fmtseq.sh -+++ b/test/fmtseq.sh -@@ -60,11 +60,6 @@ - (../src/squizz $srcdir/$f 2>&1 | grep -v RAW) && exit 1 - done - --## Checks SWISSPROT-like sequence --seqlist='sprot.seq' --for f in $seqlist; do -- (../src/squizz $srcdir/$f 2>&1 | grep -v SWISSPROT) && exit 1 --done - - exit 0 - Copied: trunk/packages/squizz/trunk/debian/patches/disable-swissprot-test.patch (from rev 6361, trunk/packages/squizz/trunk/debian/patches/debianpackaging) =================================================================== --- trunk/packages/squizz/trunk/debian/patches/disable-swissprot-test.patch (rev 0) +++ trunk/packages/squizz/trunk/debian/patches/disable-swissprot-test.patch 2011-03-21 23:17:26 UTC (rev 6364) @@ -0,0 +1,65 @@ +Debian packaging patch, 21/03/2011 Olivier Sallou <[email protected]> +--- a/test/Makefile.am ++++ b/test/Makefile.am +@@ -4,7 +4,7 @@ + + TESTS_ALIS = clustal.sh mega.sh msf.sh nexus.sh phylipi.sh phylips.sh \ + stockholm.sh +-TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh sprot.sh ++TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh + + XFAIL_TESTS = + +@@ -16,6 +16,6 @@ + SEQS = sequence/embl.seq sequence/fasta.seq sequence/gde.seq \ + sequence/genbank.seq sequence/genpept.seq sequence/gcg.seq \ + sequence/ig.seq sequence/nbrf.seq sequence/pir.seq sequence/raw.seq \ +- sequence/refseqn.seq sequence/refseqp.seq sequence/sprot.seq ++ sequence/refseqn.seq sequence/refseqp.seq + + EXTRA_DIST = $(TESTS) $(DATAS) +--- a/test/Makefile.in ++++ b/test/Makefile.in +@@ -178,7 +178,7 @@ + TESTS_ALIS = clustal.sh mega.sh msf.sh nexus.sh phylipi.sh phylips.sh \ + stockholm.sh + +-TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh sprot.sh ++TESTS_SEQS = embl.sh genbank.sh ig.sh raw.sh + DATAS = $(ALIS) $(SEQS) + ALIS = align/clustal.seq align/fasta.seq align/mega.seq align/msf.seq \ + align/nexusi.seq align/phylipi.seq align/phylips.seq align/stock.seq +@@ -186,7 +186,7 @@ + SEQS = sequence/embl.seq sequence/fasta.seq sequence/gde.seq \ + sequence/genbank.seq sequence/genpept.seq sequence/gcg.seq \ + sequence/ig.seq sequence/nbrf.seq sequence/pir.seq sequence/raw.seq \ +- sequence/refseqn.seq sequence/refseqp.seq sequence/sprot.seq ++ sequence/refseqn.seq sequence/refseqp.seq + + EXTRA_DIST = $(TESTS) $(DATAS) + all: all-am +--- a/test/convseq.sh ++++ b/test/convseq.sh +@@ -7,7 +7,7 @@ + + ## Sequence files location + seqdir=$srcdir/sequence +-seqlist='embl.seq fasta.seq gcg.seq gde.seq genbank.seq genpept.seq ig.seq nbrf.seq pir.seq raw.seq refseqn.seq refseqp.seq sprot.seq' ++seqlist='embl.seq fasta.seq gcg.seq gde.seq genbank.seq genpept.seq ig.seq nbrf.seq pir.seq raw.seq refseqn.seq refseqp.seq' + + ## Checks EMBL-like sequence + for f in $seqlist; do +--- a/test/fmtseq.sh ++++ b/test/fmtseq.sh +@@ -60,11 +60,6 @@ + (../src/squizz $srcdir/$f 2>&1 | grep -v RAW) && exit 1 + done + +-## Checks SWISSPROT-like sequence +-seqlist='sprot.seq' +-for f in $seqlist; do +- (../src/squizz $srcdir/$f 2>&1 | grep -v SWISSPROT) && exit 1 +-done + + exit 0 + Modified: trunk/packages/squizz/trunk/debian/patches/series =================================================================== --- trunk/packages/squizz/trunk/debian/patches/series 2011-03-21 23:07:53 UTC (rev 6363) +++ trunk/packages/squizz/trunk/debian/patches/series 2011-03-21 23:17:26 UTC (rev 6364) @@ -1 +1,2 @@ -debianpackaging +correct-manpages-section.patch +disable-swissprot-test.patch _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
