The following commit has been merged in the master branch:
commit b0ed413331affeafbb20fb4b1aaf74aff8a8dfbf
Author: Charles Plessy <[email protected]>
Date: Tue Mar 29 14:21:00 2011 +0900
# Small progresses on collation of copyright notices and license
statements.
diff --git a/debian/copyright b/debian/copyright
index ecea701..aba709b 100644
--- a/debian/copyright
+++ b/debian/copyright
@@ -1,7 +1,11 @@
-Name: Pysam
+Format: http://dep.debian.net/deps/dep5/
Source: http://pysam.googlecode.com/files/pysam-0.3.1.tar.gz
+
+Files: *
Copyright: © 2008-2009 Genome Research Ltd.
License: MIT
+
+License: MIT
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
@@ -26,3 +30,35 @@ DRAFT
=====
The copyright of samtools and tabix must be documented as well !
+
+Files: samtools/bam.h samtools/faidx.h samtools/khash.h samtools/kseq.h
samtools/ksort.h tabix/khash.h tabix/knetfile.c.pysam.c tabix/ksort.h
tabix/tabix.h
+Copyright: 2008-2010 Genome Research Ltd (GRL).
+
+Files: samtools/bcftools/bcf.h
+Copyright: (c) 2010 Broad Institute
+
+Files: samtools/bgzf.c.pysam.c samtools/bgzf.h tabix/bgzf.c.pysam.c
tabix/bgzf.h tabix/bgzip.c.pysam.c
+Copyright: 2008 Broad Institute / Massachusetts Institute of Technology
+
+samtools/faidx.h: @copyright The Wellcome Trust Sanger Institute.
+
+Files: samtools/kaln.c.pysam.c samtools/kaln.h samtools/kprobaln.h
+Copyright: 2003-2006, 2008, 2009, by Heng Li <[email protected]>
+
+samtools/khash.h: @copyright Heng Li
+
+Files: samtools/knetfile.c.pysam.c
+Copyright: (c) 2008 Genome Research Ltd (GRL).
+ 2003-2006, 2008-2010, by Heng Li <[email protected]>
+
+Files: samtools/razf.c.pysam.c samtools/razf.h
+Copyright: 2008, Jue Ruan <[email protected]>, Heng Li <[email protected]>
+
+samtools/sam.h: @copyright Genome Research Ltd.
+
+samtools/win32/zconf.h: * Copyright (C) 1995-2005 Jean-loup Gailly.
+samtools/win32/zconf.h: * For conditions of distribution and use, see
copyright notice in zlib.h
+samtools/win32/zconf.h:# pragma map(inflate_copyright,"INCOPY")
+samtools/win32/zlib.h: Copyright (C) 1995-2005 Jean-loup Gailly and Mark Adler
+
+tabix/khash.h: @copyright Heng Li
--
interface for the SAM/BAM sequence alignment and mapping format
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