Author: osallou-guest Date: 2011-04-29 15:51:36 +0000 (Fri, 29 Apr 2011) New Revision: 6726
Removed: trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast-plus-dev.docs Modified: trunk/packages/ncbi-blast-plus/trunk/debian/changelog trunk/packages/ncbi-blast-plus/trunk/debian/control trunk/packages/ncbi-blast-plus/trunk/debian/rules Log: remove dev, update rpath issues Modified: trunk/packages/ncbi-blast-plus/trunk/debian/changelog =================================================================== --- trunk/packages/ncbi-blast-plus/trunk/debian/changelog 2011-04-29 14:59:35 UTC (rev 6725) +++ trunk/packages/ncbi-blast-plus/trunk/debian/changelog 2011-04-29 15:51:36 UTC (rev 6726) @@ -1,5 +1,5 @@ ncbi-blast-plus (2.2.25-1) unstable; urgency=low - * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP> + * Initial release (Closes: #624394) - -- Olivier Sallou <[email protected]> Wed, 27 Apr 2011 15:19:59 +0200 + -- Olivier Sallou <[email protected]> Wed, 27 Apr 2011 15:19:59 +0200 Modified: trunk/packages/ncbi-blast-plus/trunk/debian/control =================================================================== --- trunk/packages/ncbi-blast-plus/trunk/debian/control 2011-04-29 14:59:35 UTC (rev 6725) +++ trunk/packages/ncbi-blast-plus/trunk/debian/control 2011-04-29 15:51:36 UTC (rev 6726) @@ -1,7 +1,7 @@ Source: ncbi-blast-plus Section: science Priority: optional -Build-Depends: debhelper (>= 7.0.50~),libboost-all-dev,zlib1g-dev,bzip2,python,libpcre++-dev,zlib1g-dev +Build-Depends: debhelper (>= 7.0.50~),autotools-dev,libboost-all-dev,zlib1g-dev,bzip2,python,libpcre++-dev,zlib1g-dev,chrpath Standards-Version: 3.9.1 Uploaders: Olivier Sallou <[email protected]> DM-Upload-Allowed: yes @@ -20,14 +20,11 @@ used sequence similarity tool. There are versions of BLAST that compare protein queries to protein databases, nucleotide queries to nucleotide databases, as well as versions that translate nucleotide - queries or databases in all six frames and compare to protein databases or queries. + queries or databases in all six frames and compare to protein databases + or queries. PSI-BLAST produces a position-specific-scoring-matrix (PSSM) starting with a protein query, and then uses that PSSM to perform further searches. - It is also possible to compare a protein or nucleotide query to a database of PSSM’s. - The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as a network service. - -Package: ncbi-blast-plus-dev -Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends} -Description: Libraries and includes for development - Contains static libraries files and ncbi-tools++ includes. + It is also possible to compare a protein or nucleotide query to a + database of PSSM’s. + The NCBI supports a BLAST web page at blast.ncbi.nlm.nih.gov as well as + a network service. Deleted: trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast-plus-dev.docs =================================================================== --- trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast-plus-dev.docs 2011-04-29 14:59:35 UTC (rev 6725) +++ trunk/packages/ncbi-blast-plus/trunk/debian/ncbi-blast-plus-dev.docs 2011-04-29 15:51:36 UTC (rev 6726) @@ -1 +0,0 @@ -include/util/bitset/license.txt Modified: trunk/packages/ncbi-blast-plus/trunk/debian/rules =================================================================== --- trunk/packages/ncbi-blast-plus/trunk/debian/rules 2011-04-29 14:59:35 UTC (rev 6725) +++ trunk/packages/ncbi-blast-plus/trunk/debian/rules 2011-04-29 15:51:36 UTC (rev 6726) @@ -9,7 +9,7 @@ # Uncomment this to turn on verbose mode. #export DH_VERBOSE=1 -export DEB_CONFIGURE_EXTRA_FLAGS= --with-dll --without-debug --with-mt --without-gbench --without-internal --libdir=${CURDIR}/debian/ncbi-blast-plus/usr/lib/ncbi-blast-plus --bindir=${CURDIR}/debian/ncbi-blast-plus/usr/bin --includedir=${CURDIR}/debian/ncbi-blast-plus/usr/include --without-dbapi --without-serial --without-objects --without-ncbi-crypt --without-3psw +export DEB_CONFIGURE_EXTRA_FLAGS= --with-dll --without-debug --with-mt --without-gbench --without-internal --libdir=${CURDIR}/debian/ncbi-blast-plus/usr/lib/ncbi-blast-plus --bindir=${CURDIR}/debian/ncbi-blast-plus/usr/bin --includedir=${CURDIR}/debian/ncbi-blast-plus/usr/include --without-3psw --without-dbapi override_dh_auto_configure: ${CURDIR}/configure ${DEB_CONFIGURE_EXTRA_FLAGS} --prefix=${CURDIR}/debian/ncbi-blast-plus @@ -18,10 +18,12 @@ override_dh_install: dh_install rm -f ${CURDIR}/debian/ncbi-blast-plus/usr/bin/*test* - mkdir -p ${CURDIR}/debian/ncbi-blast-plus-dev/usr/lib/ncbi-blast-plus + #mkdir -p ${CURDIR}/debian/ncbi-blast-plus-dev/usr/lib/ncbi-blast-plus + rm -f ${CURDIR}/debian/ncbi-blast-plus/usr/lib/ncbi-blast-plus/*.a #mv ${CURDIR}/debian/ncbi-blast-plus/usr/lib/ncbi-blast-plus/*.a ${CURDIR}/debian/ncbi-blast-plus-dev/usr/lib/ncbi-blast-plus/ - mv ${CURDIR}/debian/ncbi-blast-plus/usr/include ${CURDIR}/debian/ncbi-blast-plus-dev/usr/ - + #mv ${CURDIR}/debian/ncbi-blast-plus/usr/include ${CURDIR}/debian/ncbi-blast-plus-dev/usr/ + rm -rf ${CURDIR}/debian/ncbi-blast-plus/usr/include + find ${CURDIR}/debian/ncbi-blast-plus/usr/bin/ -type f -not -name "*.p*" | xargs chrpath -d override_dh_clean: dh_clean _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
