Author: plessy Date: 2011-05-12 04:00:30 +0000 (Thu, 12 May 2011) New Revision: 6821
Added: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/changelog trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/control trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/copyright trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/embassy-domsearch.lintian-overrides Removed: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/changelog trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/control trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/copyright trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/embassy-domsearch.lintian-overrides Log: [svn-buildpackage] Tagging embassy-domsearch 0.1.0++20100721-3 Property changes on: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3 ___________________________________________________________________ Added: svn:mergeinfo + Deleted: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/changelog =================================================================== --- trunk/packages/embassy-domsearch/trunk/debian/changelog 2011-05-11 07:39:28 UTC (rev 6809) +++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/changelog 2011-05-12 04:00:30 UTC (rev 6821) @@ -1,48 +0,0 @@ -embassy-domsearch (0.1.0++20100721-3) UNRELEASED; urgency=low - - * Corrected version mangling in debian/watch. - * Set RPATH with “-Wl,--rpath” as GCC 4.6 does not accept “-R” anymore. - Closes: #625193, LP: #771001. - - -- Charles Plessy <[email protected]> Thu, 23 Sep 2010 13:12:18 +0900 - -embassy-domsearch (0.1.0++20100721-2) unstable; urgency=low - - * Built on emboss-lib 6.3.1-6, pre-emptively depending on versions - lower than 6.3.2, because backwards compatibility is sometimes - broken (debian/control, debian/rules). - * Set an RPATH to /usr/lib/emboss/lib for using EMBOSS private - libraries (debian/rules, debian/embassy-domsearch.lintian-overrides). - * Refreshed debian/copyright to test the latest DEP-5 format. - - -- Charles Plessy <[email protected]> Thu, 23 Sep 2010 13:04:32 +0900 - -embassy-domsearch (0.1.0++20100721-1) unstable; urgency=low - - * New upstream release in which the version number was unchanged. - * Build-Depends on emboss 6.3.1 (debian/control, debian/rules, - closes: #591121). - * Build-Depends on libmysqlclient-dev and libpq-dev until emboss is fixed. - * Pass -Wl,--as-needed to avoid unneeded binary dependencies (debian/rules). - * Incremented Standards-Version to reflect conformance with Policy 3.9.1 - (debian/control, no changes needed). - - -- Charles Plessy <[email protected]> Wed, 11 Aug 2010 20:33:08 +0900 - -embassy-domsearch (0.1.0++20100115-1) unstable; urgency=low - - * New upstream release in which the version number was unchanged. - (I chose a strange version number to avoid an epoch because of - the typo in the previous number). - * debian/control: - - Build against EMBOSS 6.2 (Closes: #587119). - - Checked conformance with Policy 3.8.4 (no changes needed). - * debian/*manpages* refreshed. - - -- Charles Plessy <[email protected]> Sat, 26 Jun 2010 22:58:36 +0900 - -embassy-domsearch (0.1.0+20980715-1) unstable; urgency=low - - * Initial release (Closes: #537204). - - -- Charles Plessy <[email protected]> Mon, 20 Jul 2009 10:43:26 +0900 Copied: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/changelog (from rev 6820, trunk/packages/embassy-domsearch/trunk/debian/changelog) =================================================================== --- trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/changelog (rev 0) +++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/changelog 2011-05-12 04:00:30 UTC (rev 6821) @@ -0,0 +1,52 @@ +embassy-domsearch (0.1.0++20100721-3) unstable; urgency=low + + * Corrected version mangling in debian/watch. + * Set RPATH with “-Wl,--rpath” as GCC 4.6 does not accept “-R” anymore. + (debian/rules) Closes: #625193, LP: #771001. + * Incremented Standards-Version to reflect conformance with Policy 3.9.2 + (debian/control, no changes needed). + * Updated debian/embassy-domsearch.lintian-overrides for lintian 2.5. + * debian/copyright validated with config-edit. + + -- Charles Plessy <[email protected]> Wed, 11 May 2011 18:52:14 +0900 + +embassy-domsearch (0.1.0++20100721-2) unstable; urgency=low + + * Built on emboss-lib 6.3.1-6, pre-emptively depending on versions + lower than 6.3.2, because backwards compatibility is sometimes + broken (debian/control, debian/rules). + * Set an RPATH to /usr/lib/emboss/lib for using EMBOSS private + libraries (debian/rules, debian/embassy-domsearch.lintian-overrides). + * Refreshed debian/copyright to test the latest DEP-5 format. + + -- Charles Plessy <[email protected]> Thu, 23 Sep 2010 13:04:32 +0900 + +embassy-domsearch (0.1.0++20100721-1) unstable; urgency=low + + * New upstream release in which the version number was unchanged. + * Build-Depends on emboss 6.3.1 (debian/control, debian/rules, + closes: #591121). + * Build-Depends on libmysqlclient-dev and libpq-dev until emboss is fixed. + * Pass -Wl,--as-needed to avoid unneeded binary dependencies (debian/rules). + * Incremented Standards-Version to reflect conformance with Policy 3.9.1 + (debian/control, no changes needed). + + -- Charles Plessy <[email protected]> Wed, 11 Aug 2010 20:33:08 +0900 + +embassy-domsearch (0.1.0++20100115-1) unstable; urgency=low + + * New upstream release in which the version number was unchanged. + (I chose a strange version number to avoid an epoch because of + the typo in the previous number). + * debian/control: + - Build against EMBOSS 6.2 (Closes: #587119). + - Checked conformance with Policy 3.8.4 (no changes needed). + * debian/*manpages* refreshed. + + -- Charles Plessy <[email protected]> Sat, 26 Jun 2010 22:58:36 +0900 + +embassy-domsearch (0.1.0+20980715-1) unstable; urgency=low + + * Initial release (Closes: #537204). + + -- Charles Plessy <[email protected]> Mon, 20 Jul 2009 10:43:26 +0900 Deleted: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/control =================================================================== --- trunk/packages/embassy-domsearch/trunk/debian/control 2011-05-11 07:39:28 UTC (rev 6809) +++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/control 2011-05-12 04:00:30 UTC (rev 6821) @@ -1,35 +0,0 @@ -Source: embassy-domsearch -Section: science -Priority: optional -Build-Depends: - cdbs, - debhelper (>= 7), - emboss-lib (>= 6.3.1-6~), - emboss-lib (<< 6.3.2~), - libx11-dev, - libgd2-xpm-dev, - libmysqlclient-dev, - libpq-dev -Maintainer: Debian Med Packaging Team <[email protected]> -DM-Upload-Allowed: yes -Uploaders: Charles Plessy <[email protected]> -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-domsearch/trunk/?rev=0&sc=0 -Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/embassy-domsearch/trunk/ -Standards-Version: 3.9.1 -Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMSEARCH - -Package: embassy-domsearch -Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib (>= 6.3.1-6~), emboss-lib (<< 6.3.2~) -Recommends: emboss -Suggests: embassy -Description: Extra EMBOSS commands to search for protein domains - The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP - for their protein domain research. They are included as an EMBASSY package as - a work in progress. - . - Applications in this DOMSEARCH release are seqfraggle (removes fragment - sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch - (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove - ambiguous classified sequences from DHF files) and seqwords (Generates DHF - files from keyword search of UniProt). Copied: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/control (from rev 6820, trunk/packages/embassy-domsearch/trunk/debian/control) =================================================================== --- trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/control (rev 0) +++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/control 2011-05-12 04:00:30 UTC (rev 6821) @@ -0,0 +1,35 @@ +Source: embassy-domsearch +Section: science +Priority: optional +Build-Depends: + cdbs, + debhelper (>= 7), + emboss-lib (>= 6.3.1-6~), + emboss-lib (<< 6.3.2~), + libx11-dev, + libgd2-xpm-dev, + libmysqlclient-dev, + libpq-dev +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Charles Plessy <[email protected]> +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-domsearch/trunk/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/embassy-domsearch/trunk/ +Standards-Version: 3.9.2 +Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMSEARCH + +Package: embassy-domsearch +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib (>= 6.3.1-6~), emboss-lib (<< 6.3.2~) +Recommends: emboss +Suggests: embassy +Description: Extra EMBOSS commands to search for protein domains + The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP + for their protein domain research. They are included as an EMBASSY package as + a work in progress. + . + Applications in this DOMSEARCH release are seqfraggle (removes fragment + sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch + (generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove + ambiguous classified sequences from DHF files) and seqwords (Generates DHF + files from keyword search of UniProt). Deleted: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/copyright =================================================================== --- trunk/packages/embassy-domsearch/trunk/debian/copyright 2011-05-11 07:39:28 UTC (rev 6809) +++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/copyright 2011-05-12 04:00:30 UTC (rev 6821) @@ -1,21 +0,0 @@ -Format: DEP-5 -Source: ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.0.tar.gz -Copyright: Jon Ison ([email protected]) - Matt Blades - Ranjeeva Ranasinghe -License: GPL-2+ - This package is free software; you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2 of the License, or - (at your option) any later version. - . - This package is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - . - You should have received a copy of the GNU General Public License - along with this package; if not, write to the Free Software - Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA -Comment: On Debian systems, the complete text of the GNU General Public License - version 2 can be found in ‘/usr/share/common-licenses/GPL-2’. Copied: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/copyright (from rev 6820, trunk/packages/embassy-domsearch/trunk/debian/copyright) =================================================================== --- trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/copyright (rev 0) +++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/copyright 2011-05-12 04:00:30 UTC (rev 6821) @@ -0,0 +1,23 @@ +Format: http://dep.debian.net/deps/dep5/ +Source: ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.0.tar.gz + +Files: * +Copyright: Jon Ison ([email protected]) + Matt Blades + Ranjeeva Ranasinghe +License: GPL-2+ + This package is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this package; if not, write to the Free Software + Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA +Comment: On Debian systems, the complete text of the GNU General Public License + version 2 can be found in ‘/usr/share/common-licenses/GPL-2’. Deleted: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/embassy-domsearch.lintian-overrides =================================================================== --- trunk/packages/embassy-domsearch/trunk/debian/embassy-domsearch.lintian-overrides 2011-05-11 07:39:28 UTC (rev 6809) +++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/embassy-domsearch.lintian-overrides 2011-05-12 04:00:30 UTC (rev 6821) @@ -1,7 +0,0 @@ -# The embassy packages use privately some of the EMBOSS libraries. They have -# the same upstream authors and are released together. -embassy-domsearch: binary-or-shlib-defines-rpath ./usr/bin/seqfraggle /usr/lib/emboss/lib -embassy-domsearch: binary-or-shlib-defines-rpath ./usr/bin/seqnr /usr/lib/emboss/lib -embassy-domsearch: binary-or-shlib-defines-rpath ./usr/bin/seqsearch /usr/lib/emboss/lib -embassy-domsearch: binary-or-shlib-defines-rpath ./usr/bin/seqsort /usr/lib/emboss/lib -embassy-domsearch: binary-or-shlib-defines-rpath ./usr/bin/seqwords /usr/lib/emboss/lib Copied: trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/embassy-domsearch.lintian-overrides (from rev 6820, trunk/packages/embassy-domsearch/trunk/debian/embassy-domsearch.lintian-overrides) =================================================================== --- trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/embassy-domsearch.lintian-overrides (rev 0) +++ trunk/packages/embassy-domsearch/tags/0.1.0++20100721-3/debian/embassy-domsearch.lintian-overrides 2011-05-12 04:00:30 UTC (rev 6821) @@ -0,0 +1,3 @@ +# The embassy packages use privately some of the EMBOSS libraries. They have +# the same upstream authors and are released together. +embassy-domsearch: binary-or-shlib-defines-rpath * _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
