Author: plessy Date: 2011-05-12 04:49:52 +0000 (Thu, 12 May 2011) New Revision: 6823
Added: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/changelog trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/control trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/copyright trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/embassy-domalign.lintian-overrides Removed: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/changelog trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/control trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/copyright trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/embassy-domalign.lintian-overrides Log: [svn-buildpackage] Tagging embassy-domalign 0.1.0+20100721-3 Deleted: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/changelog =================================================================== --- trunk/packages/embassy-domalign/trunk/debian/changelog 2011-05-11 22:47:35 UTC (rev 6819) +++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/changelog 2011-05-12 04:49:52 UTC (rev 6823) @@ -1,72 +0,0 @@ -embassy-domalign (0.1.0+20100721-3) UNRELEASED; urgency=low - - * Set RPATH with “-Wl,--rpath” as GCC 4.6 does not accept “-R” anymore. - Closes: #625189, LP: #771115. - - -- Charles Plessy <[email protected]> Sun, 08 May 2011 20:52:18 +0900 - -embassy-domalign (0.1.0+20100721-2) unstable; urgency=low - - * Built on emboss-lib 6.3.1-6, pre-emptively depending on versions - lower than 6.3.2, because backwards compatibility is sometimes - broken (debian/control, debian/rules). - * Set an RPATH to /usr/lib/emboss/lib for using EMBOSS private - libraries (debian/rules, debian/embassy-domalign.lintian-overrides). - * Use quilt since simple-patchsys is deprecated (debian/control, - debian/rules, debian/patches/series). - * Refreshed debian/copyright to test the latest DEP-5 format. - - -- Charles Plessy <[email protected]> Wed, 22 Sep 2010 20:05:29 +0900 - -embassy-domalign (0.1.0+20100721-1) unstable; urgency=low - - * New upstream release in which the version number was unchanged. - * Build-Depends on emboss 6.3.1 (debian/control, debian/rules, - closes: #591116). - * Build-Depends on libmysqlclient-dev and libpq-dev until emboss is fixed. - * Pass -Wl,--as-needed to avoid unneeded binary dependencies (debian/rules). - * Incremented Standards-Version to reflect conformance with Policy 3.9.1 - (debian/control, no changes needed). - * Patched src/Makefile.am to use Debian's libexpat, using CDBS - (debian/patches/enable-esystemlibs.patch, debian/rules, debian/control). - - -- Charles Plessy <[email protected]> Wed, 11 Aug 2010 19:45:22 +0900 - -embassy-domalign (0.1.0+20100115-1) unstable; urgency=low - - * New upstream release in which the version number was unchanged. - * debian/control: - - Build against EMBOSS 6.2 (Closes: #587113). - - Checked conformance with Policy 3.8.4 (no changes needed). - * debian/*manpages* refreshed. - -- Charles Plessy <[email protected]> Sat, 26 Jun 2010 18:51:56 +0900 - -embassy-domalign (0.1.0+20090715-1) unstable; urgency=low - - * New upstream release in which the version number was unchanged. - * debian/control: - - Build against EMBOSS 6.1 - - Checked conformance with Policy 3.8.2 (no changes needed). - * debian/watch: mangle Debian version to ignore the timestamp. - * Refreshed and experimeted on debian/copyright. - * debian/*manpages* refreshed and moved to section 1e. - - -- Charles Plessy <[email protected]> Sat, 18 Jul 2009 23:33:19 +0900 - -embassy-domalign (0.1.0+20080715-1) unstable; urgency=low - - * New upstream release in which the version number was unchanged. - * debian/control: - - Updated my email address. - - Build against EMBOSS 6. - - Using debhelper 7. - - Checked conformance with Policy 3.8.1 (no changes needed). - - Corrected DM-Upload-Allowed. - - -- Charles Plessy <[email protected]> Tue, 21 Apr 2009 10:12:59 +0900 - -embassy-domalign (0.1.0-1) unstable; urgency=low - - * Initial release - - -- Charles Plessy <[email protected]> Wed, 26 Sep 2007 09:45:52 +0900 Copied: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/changelog (from rev 6822, trunk/packages/embassy-domalign/trunk/debian/changelog) =================================================================== --- trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/changelog (rev 0) +++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/changelog 2011-05-12 04:49:52 UTC (rev 6823) @@ -0,0 +1,76 @@ +embassy-domalign (0.1.0+20100721-3) unstable; urgency=low + + * Set RPATH with “-Wl,--rpath” as GCC 4.6 does not accept “-R” anymore. + (debian/rules) Closes: #625189, LP: #771115. + * Incremented Standards-Version to reflect conformance with Policy 3.9.2 + (debian/control, no changes needed). + * Updated debian/embassy-domsearch.lintian-overrides for lintian 2.5. + * debian/copyright validated with config-edit. + + -- Charles Plessy <[email protected]> Thu, 12 May 2011 11:13:56 +0900 + +embassy-domalign (0.1.0+20100721-2) unstable; urgency=low + + * Built on emboss-lib 6.3.1-6, pre-emptively depending on versions + lower than 6.3.2, because backwards compatibility is sometimes + broken (debian/control, debian/rules). + * Set an RPATH to /usr/lib/emboss/lib for using EMBOSS private + libraries (debian/rules, debian/embassy-domalign.lintian-overrides). + * Use quilt since simple-patchsys is deprecated (debian/control, + debian/rules, debian/patches/series). + * Refreshed debian/copyright to test the latest DEP-5 format. + + -- Charles Plessy <[email protected]> Wed, 22 Sep 2010 20:05:29 +0900 + +embassy-domalign (0.1.0+20100721-1) unstable; urgency=low + + * New upstream release in which the version number was unchanged. + * Build-Depends on emboss 6.3.1 (debian/control, debian/rules, + closes: #591116). + * Build-Depends on libmysqlclient-dev and libpq-dev until emboss is fixed. + * Pass -Wl,--as-needed to avoid unneeded binary dependencies (debian/rules). + * Incremented Standards-Version to reflect conformance with Policy 3.9.1 + (debian/control, no changes needed). + * Patched src/Makefile.am to use Debian's libexpat, using CDBS + (debian/patches/enable-esystemlibs.patch, debian/rules, debian/control). + + -- Charles Plessy <[email protected]> Wed, 11 Aug 2010 19:45:22 +0900 + +embassy-domalign (0.1.0+20100115-1) unstable; urgency=low + + * New upstream release in which the version number was unchanged. + * debian/control: + - Build against EMBOSS 6.2 (Closes: #587113). + - Checked conformance with Policy 3.8.4 (no changes needed). + * debian/*manpages* refreshed. + -- Charles Plessy <[email protected]> Sat, 26 Jun 2010 18:51:56 +0900 + +embassy-domalign (0.1.0+20090715-1) unstable; urgency=low + + * New upstream release in which the version number was unchanged. + * debian/control: + - Build against EMBOSS 6.1 + - Checked conformance with Policy 3.8.2 (no changes needed). + * debian/watch: mangle Debian version to ignore the timestamp. + * Refreshed and experimeted on debian/copyright. + * debian/*manpages* refreshed and moved to section 1e. + + -- Charles Plessy <[email protected]> Sat, 18 Jul 2009 23:33:19 +0900 + +embassy-domalign (0.1.0+20080715-1) unstable; urgency=low + + * New upstream release in which the version number was unchanged. + * debian/control: + - Updated my email address. + - Build against EMBOSS 6. + - Using debhelper 7. + - Checked conformance with Policy 3.8.1 (no changes needed). + - Corrected DM-Upload-Allowed. + + -- Charles Plessy <[email protected]> Tue, 21 Apr 2009 10:12:59 +0900 + +embassy-domalign (0.1.0-1) unstable; urgency=low + + * Initial release + + -- Charles Plessy <[email protected]> Wed, 26 Sep 2007 09:45:52 +0900 Deleted: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/control =================================================================== --- trunk/packages/embassy-domalign/trunk/debian/control 2011-05-11 22:47:35 UTC (rev 6819) +++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/control 2011-05-12 04:49:52 UTC (rev 6823) @@ -1,38 +0,0 @@ -Source: embassy-domalign -Section: science -Priority: optional -Build-Depends: - cdbs, - debhelper (>= 7), - quilt, - emboss-lib (>= 6.3.1-6~), - emboss-lib (<< 6.3.2~), - libx11-dev, - libgd2-xpm-dev, - libmysqlclient-dev, - libpq-dev, - automake -# automake is necessary as long as src/Makefile.am is patched. -Maintainer: Debian Med Packaging Team <[email protected]> -DM-Upload-Allowed: yes -Uploaders: Charles Plessy <[email protected]> -Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-domalign/trunk/?rev=0&sc=0 -Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/embassy-domalign/trunk/ -Standards-Version: 3.9.1 -Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN - -Package: embassy-domalign -Architecture: any -Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib (>= 6.3.1-6~), emboss-lib (<< 6.3.2~) -Recommends: emboss -Suggests: embassy -Description: Extra EMBOSS commands for protein domain alignment - The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP - for their protein domain research. They are included as an EMBASSY package as - a work in progress. - . - Applications in the current domalign release are allversusall (sequence - similarity data from all-versus-all comparison), domainalign (generates - alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file - to identify representative structures) and seqalign (extend alignments (DAF - file) with sequences (DHF file)). Copied: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/control (from rev 6822, trunk/packages/embassy-domalign/trunk/debian/control) =================================================================== --- trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/control (rev 0) +++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/control 2011-05-12 04:49:52 UTC (rev 6823) @@ -0,0 +1,38 @@ +Source: embassy-domalign +Section: science +Priority: optional +Build-Depends: + cdbs, + debhelper (>= 7), + quilt, + emboss-lib (>= 6.3.1-6~), + emboss-lib (<< 6.3.2~), + libx11-dev, + libgd2-xpm-dev, + libmysqlclient-dev, + libpq-dev, + automake +# automake is necessary as long as src/Makefile.am is patched. +Maintainer: Debian Med Packaging Team <[email protected]> +DM-Upload-Allowed: yes +Uploaders: Charles Plessy <[email protected]> +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-domalign/trunk/?rev=0&sc=0 +Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/embassy-domalign/trunk/ +Standards-Version: 3.9.2 +Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMALIGN + +Package: embassy-domalign +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends}, emboss-lib (>= 6.3.1-6~), emboss-lib (<< 6.3.2~) +Recommends: emboss +Suggests: embassy +Description: Extra EMBOSS commands for protein domain alignment + The DOMALIGN programs were developed by Jon Ison and colleagues at MRC HGMP + for their protein domain research. They are included as an EMBASSY package as + a work in progress. + . + Applications in the current domalign release are allversusall (sequence + similarity data from all-versus-all comparison), domainalign (generates + alignments (DAF file) for nodes in a DCF file), domainrep (reorders DCF file + to identify representative structures) and seqalign (extend alignments (DAF + file) with sequences (DHF file)). Deleted: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/copyright =================================================================== --- trunk/packages/embassy-domalign/trunk/debian/copyright 2011-05-11 22:47:35 UTC (rev 6819) +++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/copyright 2011-05-12 04:49:52 UTC (rev 6823) @@ -1,23 +0,0 @@ -Format: DEP-5 -Source: ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.0.tar.gz -Copyright: - Matt Blades - Jon Ison ([email protected]) - Ranjeeva Ranasinghe -License: GPL-2+ - This package is free software; you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2 of the License, or - (at your option) any later version. - . - This package is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - . - You should have received a copy of the GNU General Public License - along with this package; if not, write to the Free Software - Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA -Comment: - On Debian systems, the complete text of the GNU General Public License version - 2 can be found in ‘/usr/share/common-licenses/GPL-2’. Copied: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/copyright (from rev 6822, trunk/packages/embassy-domalign/trunk/debian/copyright) =================================================================== --- trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/copyright (rev 0) +++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/copyright 2011-05-12 04:49:52 UTC (rev 6823) @@ -0,0 +1,25 @@ +Format: http://dep.debian.net/deps/dep5/ +Source: ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.0.tar.gz + +Files: * +Copyright: + Matt Blades + Jon Ison ([email protected]) + Ranjeeva Ranasinghe +License: GPL-2+ + This package is free software; you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation; either version 2 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this package; if not, write to the Free Software + Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA +Comment: + On Debian systems, the complete text of the GNU General Public License version + 2 can be found in ‘/usr/share/common-licenses/GPL-2’. Deleted: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/embassy-domalign.lintian-overrides =================================================================== --- trunk/packages/embassy-domalign/trunk/debian/embassy-domalign.lintian-overrides 2011-05-11 22:47:35 UTC (rev 6819) +++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/embassy-domalign.lintian-overrides 2011-05-12 04:49:52 UTC (rev 6823) @@ -1,6 +0,0 @@ -# The embassy packages use privately some of the EMBOSS libraries. They have -# the same upstream authors and are released together. -embassy-domalign: binary-or-shlib-defines-rpath ./usr/bin/allversusall /usr/lib/emboss/lib -embassy-domalign: binary-or-shlib-defines-rpath ./usr/bin/domainalign /usr/lib/emboss/lib -embassy-domalign: binary-or-shlib-defines-rpath ./usr/bin/domainrep /usr/lib/emboss/lib -embassy-domalign: binary-or-shlib-defines-rpath ./usr/bin/seqalign /usr/lib/emboss/lib Copied: trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/embassy-domalign.lintian-overrides (from rev 6822, trunk/packages/embassy-domalign/trunk/debian/embassy-domalign.lintian-overrides) =================================================================== --- trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/embassy-domalign.lintian-overrides (rev 0) +++ trunk/packages/embassy-domalign/tags/0.1.0+20100721-3/debian/embassy-domalign.lintian-overrides 2011-05-12 04:49:52 UTC (rev 6823) @@ -0,0 +1,3 @@ +# The embassy packages use privately some of the EMBOSS libraries. They have +# the same upstream authors and are released together. +embassy-domalign: binary-or-shlib-defines-rpath * _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/debian-med-commit
