Author: alteholz-guest
Date: 2011-06-06 17:52:47 +0000 (Mon, 06 Jun 2011)
New Revision: 6920
Added:
trunk/packages/mgltools/dejavu/trunk/debian/mgltools-dejavu.lintian-overrides
trunk/packages/mgltools/mslib/trunk/debian/watch
trunk/packages/mgltools/networkeditor/trunk/debian/mgltools-networkeditor.lintian-overrides
trunk/packages/mgltools/pyautodock/trunk/debian/mgltools-pyautodock.lintian-overrides
trunk/packages/mgltools/pybabel/trunk/debian/mgltools-pybabel.lintian-overrides
trunk/packages/mgltools/support/trunk/debian/mgltools-support.lintian-overrides
trunk/packages/mgltools/symserv/trunk/debian/mgltools-symserv.lintian-overrides
trunk/packages/mgltools/viewerframework/trunk/debian/mgltools-viewerframework.lintian-overrides
trunk/packages/mgltools/vision/trunk/debian/mgltools-vision.lintian-overrides
trunk/packages/mgltools/vision/trunk/debian/patches/series
trunk/packages/mgltools/volume/trunk/debian/mgltools-volume.lintian-overrides
Modified:
trunk/packages/mgltools/mslib/trunk/debian/control
trunk/packages/mgltools/pyautodock/trunk/debian/control
trunk/packages/mgltools/qslimlib/trunk/debian/control
trunk/packages/mgltools/qslimlib/trunk/debian/rules
trunk/packages/mgltools/vision/trunk/debian/patches/unversioned_shebang.patch
trunk/packages/mgltools/vision/trunk/debian/rules
Log:
some lintian calming
Added:
trunk/packages/mgltools/dejavu/trunk/debian/mgltools-dejavu.lintian-overrides
===================================================================
---
trunk/packages/mgltools/dejavu/trunk/debian/mgltools-dejavu.lintian-overrides
(rev 0)
+++
trunk/packages/mgltools/dejavu/trunk/debian/mgltools-dejavu.lintian-overrides
2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as
well
+mgltools-dejavu: extra-license-file
Modified: trunk/packages/mgltools/mslib/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/mslib/trunk/debian/control 2011-06-06 14:52:50 UTC
(rev 6919)
+++ trunk/packages/mgltools/mslib/trunk/debian/control 2011-06-06 17:52:47 UTC
(rev 6920)
@@ -2,7 +2,7 @@
Section: non-free/science
Priority: optional
Maintainer: Debian Med Packaging Team
<[email protected]>
-DM-Upload-Allowed: no
+DM-Upload-Allowed: yes
XS-Autobuild: no
Uploaders: Steffen Moeller <[email protected]>, Sargis Dallakyan
<[email protected]>, Thorsten Alteholz <[email protected]>
Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>=
0.4), python-all-dev
@@ -15,4 +15,6 @@
Architecture: i386 amd64
Depends: ${shlibs:Depends}, ${misc:Depends}, ${python:Depends},
mgltools-qslimlib
Description: MSMS library python extension module
- The library is needed by mgltools-autodocktools at runtime.
+ The library is needed by mgltools-autodocktools at runtime. This package
+ contains an interface to build a Python extension for MSMS library.
+ SWIG (version 1.3.20 or higher) is used for generating a C wrapper code.
Added: trunk/packages/mgltools/mslib/trunk/debian/watch
===================================================================
--- trunk/packages/mgltools/mslib/trunk/debian/watch
(rev 0)
+++ trunk/packages/mgltools/mslib/trunk/debian/watch 2011-06-06 17:52:47 UTC
(rev 6920)
@@ -0,0 +1,2 @@
+version=3
+http://mgltools.scripps.edu/downloads/.*mgltools_source_([0-9.]+)\.tar\.gz
Added:
trunk/packages/mgltools/networkeditor/trunk/debian/mgltools-networkeditor.lintian-overrides
===================================================================
---
trunk/packages/mgltools/networkeditor/trunk/debian/mgltools-networkeditor.lintian-overrides
(rev 0)
+++
trunk/packages/mgltools/networkeditor/trunk/debian/mgltools-networkeditor.lintian-overrides
2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as
well
+mgltools-networkeditor: extra-license-file
Modified: trunk/packages/mgltools/pyautodock/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/pyautodock/trunk/debian/control 2011-06-06
14:52:50 UTC (rev 6919)
+++ trunk/packages/mgltools/pyautodock/trunk/debian/control 2011-06-06
17:52:47 UTC (rev 6920)
@@ -20,9 +20,9 @@
Description: Python implementation of autodock
This package is part of the mgltools set of Python libraries which
provide an infrastructure for the analysis of protein structures and
- their docking of chemical compounds. This package provides a python
+ their docking of chemical compounds. This package provides a Python
implementation of the autodock3 scoring function and of the new
- autodock4 scoring function. Also it includes a python implementation
+ autodock4 scoring function. Also it includes a Python implementation
of AutoGrid.
.
AutoDock is a well established package for the automated screening of
Added:
trunk/packages/mgltools/pyautodock/trunk/debian/mgltools-pyautodock.lintian-overrides
===================================================================
---
trunk/packages/mgltools/pyautodock/trunk/debian/mgltools-pyautodock.lintian-overrides
(rev 0)
+++
trunk/packages/mgltools/pyautodock/trunk/debian/mgltools-pyautodock.lintian-overrides
2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as
well
+mgltools-pyautodock: extra-license-file
Added:
trunk/packages/mgltools/pybabel/trunk/debian/mgltools-pybabel.lintian-overrides
===================================================================
---
trunk/packages/mgltools/pybabel/trunk/debian/mgltools-pybabel.lintian-overrides
(rev 0)
+++
trunk/packages/mgltools/pybabel/trunk/debian/mgltools-pybabel.lintian-overrides
2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as
well
+mgltools-pybabel: extra-license-file
Modified: trunk/packages/mgltools/qslimlib/trunk/debian/control
===================================================================
--- trunk/packages/mgltools/qslimlib/trunk/debian/control 2011-06-06
14:52:50 UTC (rev 6919)
+++ trunk/packages/mgltools/qslimlib/trunk/debian/control 2011-06-06
17:52:47 UTC (rev 6920)
@@ -5,7 +5,7 @@
DM-Upload-Allowed: yes
XS-Autobuild: yes
Uploaders: Steffen Moeller <[email protected]>, Sargis Dallakyan
<[email protected]>, Thorsten Alteholz <[email protected]>
-Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>=
0.4), python2.5-dev, swig (>= 1.3.20), mesa-common-dev, libglu1-mesa-dev,
python-numpy
+Build-Depends: debhelper (>= 5.0.38), python-central (>= 0.5.6), cdbs (>=
0.4), python-all, swig (>= 1.3.20), mesa-common-dev, libglu1-mesa-dev,
python-numpy
Standards-Version: 3.9.2
XS-Python-Version: >= 2.5
Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/mgltools/qslimlib/trunk/?rev=0&sc=0
@@ -21,8 +21,8 @@
provide an infrastructure for the analysis of protein structures and
their docking of chemical compounds.
.
- This module builds a python extension of the QSlim Surface
- Simplification library developped by Michael Garland (University of
+ This module builds a Python extension of the QSlim Surface
+ Simplification library developed by Michael Garland (University of
Illinois). The library implements the quadric-based algorithm
for simplification of highly detailed polygonal surface
models into faithful approximations containing fewer polygons
@@ -31,5 +31,5 @@
This distribution contains source code of the library (see
src/COPYING.txt). Distutils are used to wrap the library with SWIG
(version 1.3.20 or higher), build the C++ libraries (libgfx.a, libmix.a)
- and build the python extension (_qslimlib.so).
+ and build the Python extension (_qslimlib.so).
Modified: trunk/packages/mgltools/qslimlib/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/qslimlib/trunk/debian/rules 2011-06-06 14:52:50 UTC
(rev 6919)
+++ trunk/packages/mgltools/qslimlib/trunk/debian/rules 2011-06-06 17:52:47 UTC
(rev 6920)
@@ -13,8 +13,7 @@
include /usr/share/cdbs/1/rules/debhelper.mk
include /usr/share/cdbs/1/class/python-distutils.mk
-#include /usr/share/cdbs/1/rules/simple-patchsys.mk
clean::
find . -name CVS -a -type d| xargs -r rm -r
- rm -rf build build-stamp debian/Pmv
+ rm -rf build build-stamp config.status config.log
Added:
trunk/packages/mgltools/support/trunk/debian/mgltools-support.lintian-overrides
===================================================================
---
trunk/packages/mgltools/support/trunk/debian/mgltools-support.lintian-overrides
(rev 0)
+++
trunk/packages/mgltools/support/trunk/debian/mgltools-support.lintian-overrides
2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as
well
+mgltools-support: extra-license-file
Added:
trunk/packages/mgltools/symserv/trunk/debian/mgltools-symserv.lintian-overrides
===================================================================
---
trunk/packages/mgltools/symserv/trunk/debian/mgltools-symserv.lintian-overrides
(rev 0)
+++
trunk/packages/mgltools/symserv/trunk/debian/mgltools-symserv.lintian-overrides
2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as
well
+mgltools-symserv: extra-license-file
Added:
trunk/packages/mgltools/viewerframework/trunk/debian/mgltools-viewerframework.lintian-overrides
===================================================================
---
trunk/packages/mgltools/viewerframework/trunk/debian/mgltools-viewerframework.lintian-overrides
(rev 0)
+++
trunk/packages/mgltools/viewerframework/trunk/debian/mgltools-viewerframework.lintian-overrides
2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as
well
+mgltools-viewerframework: extra-license-file
Added:
trunk/packages/mgltools/vision/trunk/debian/mgltools-vision.lintian-overrides
===================================================================
---
trunk/packages/mgltools/vision/trunk/debian/mgltools-vision.lintian-overrides
(rev 0)
+++
trunk/packages/mgltools/vision/trunk/debian/mgltools-vision.lintian-overrides
2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as
well
+mgltools-vision: extra-license-file
Added: trunk/packages/mgltools/vision/trunk/debian/patches/series
===================================================================
--- trunk/packages/mgltools/vision/trunk/debian/patches/series
(rev 0)
+++ trunk/packages/mgltools/vision/trunk/debian/patches/series 2011-06-06
17:52:47 UTC (rev 6920)
@@ -0,0 +1 @@
+unversioned_shebang.patch
Modified:
trunk/packages/mgltools/vision/trunk/debian/patches/unversioned_shebang.patch
===================================================================
---
trunk/packages/mgltools/vision/trunk/debian/patches/unversioned_shebang.patch
2011-06-06 14:52:50 UTC (rev 6919)
+++
trunk/packages/mgltools/vision/trunk/debian/patches/unversioned_shebang.patch
2011-06-06 17:52:47 UTC (rev 6920)
@@ -1,4 +1,8 @@
-diff -Nur -x '*.orig' -x '*~' mgltools-vision-1.5.4.cvs.20100912//setup.py
mgltools-vision-1.5.4.cvs.20100912.new//setup.py
+Description: remove version from path to python interpreter
+Author: Luca Falavigna <[email protected]>
+Last-Update: 2011-05-09
+Index: mgltools-vision-1.5.4.cvs.20100912/setup.py
+===================================================================
--- mgltools-vision-1.5.4.cvs.20100912//setup.py 2007-09-28
19:55:27.000000000 +0200
+++ mgltools-vision-1.5.4.cvs.20100912.new//setup.py 2011-05-09
21:29:52.563352863 +0200
@@ -43,7 +43,7 @@
@@ -10,9 +14,10 @@
fnew.writelines(txt)
fnew.close()
build_scripts.copy_scripts(self)
-diff -Nur -x '*.orig' -x '*~'
mgltools-vision-1.5.4.cvs.20100912//Vision/bin/vision
mgltools-vision-1.5.4.cvs.20100912.new//Vision/bin/vision
---- mgltools-vision-1.5.4.cvs.20100912//Vision/bin/vision 2007-10-30
22:22:10.000000000 +0100
-+++ mgltools-vision-1.5.4.cvs.20100912.new//Vision/bin/vision 2011-05-09
21:29:35.735352874 +0200
+Index: mgltools-vision-1.5.4.cvs.20100912/Vision/bin/vision
+===================================================================
+--- mgltools-vision-1.5.4.cvs.20100912/Vision/bin/vision 2007-10-30
22:22:10.000000000 +0100
++++ mgltools-vision-1.5.4.cvs.20100912.new/Vision/bin/vision 2011-05-09
21:29:35.735352874 +0200
@@ -1,4 +1,4 @@
-#!/usr/bin/env python2.5
+#!/usr/bin/python
Modified: trunk/packages/mgltools/vision/trunk/debian/rules
===================================================================
--- trunk/packages/mgltools/vision/trunk/debian/rules 2011-06-06 14:52:50 UTC
(rev 6919)
+++ trunk/packages/mgltools/vision/trunk/debian/rules 2011-06-06 17:52:47 UTC
(rev 6920)
@@ -13,7 +13,6 @@
include /usr/share/cdbs/1/rules/debhelper.mk
include /usr/share/cdbs/1/class/python-distutils.mk
-include /usr/share/cdbs/1/rules/simple-patchsys.mk
install::
find . -name "runVision" | xargs -r chmod +x
Added:
trunk/packages/mgltools/volume/trunk/debian/mgltools-volume.lintian-overrides
===================================================================
---
trunk/packages/mgltools/volume/trunk/debian/mgltools-volume.lintian-overrides
(rev 0)
+++
trunk/packages/mgltools/volume/trunk/debian/mgltools-volume.lintian-overrides
2011-06-06 17:52:47 UTC (rev 6920)
@@ -0,0 +1,2 @@
+# the license is in debian/copyright but upstream wants to have it there as
well
+mgltools-volume: extra-license-file
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