Author: malex-guest Date: 2011-07-13 15:56:00 +0000 (Wed, 13 Jul 2011) New Revision: 7272
Added: trunk/packages/vienna-rna/trunk/debian/patches/fix_syntax.patch Modified: trunk/packages/vienna-rna/trunk/debian/control trunk/packages/vienna-rna/trunk/debian/patches/series trunk/packages/vienna-rna/trunk/debian/vienna-rna.lintian-overrides Log: fixed few linitin's pedantic complains . Modified: trunk/packages/vienna-rna/trunk/debian/control =================================================================== --- trunk/packages/vienna-rna/trunk/debian/control 2011-07-13 14:12:17 UTC (rev 7271) +++ trunk/packages/vienna-rna/trunk/debian/control 2011-07-13 15:56:00 UTC (rev 7272) @@ -1,12 +1,12 @@ Source: vienna-rna -Section: science Priority: optional +Section: science Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Alex Mestiashvili <[email protected]> DM-Upload-Allowed: yes -Build-Depends: debhelper (>= 7.1), autotools-dev, quilt (>= 0.47), +Build-Depends: debhelper (>= 7.1), autotools-dev, libg2-dev, libgd2-xpm-dev, libx11-dev, texinfo, texlive-latex-base, help2man, perl-doc -Standards-Version: 3.9.1 +Standards-Version: 3.9.2 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/vienna-rna/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/vienna-rna/trunk/ Homepage: http://www.tbi.univie.ac.at/~ivo/RNA/ @@ -14,7 +14,6 @@ Package: vienna-rna Architecture: any -Section: science Depends: ${shlibs:Depends}, ${perl:Depends}, ${misc:Depends} Recommends: readseq (>= 1-9) Description: RNA sequence analysis Added: trunk/packages/vienna-rna/trunk/debian/patches/fix_syntax.patch =================================================================== --- trunk/packages/vienna-rna/trunk/debian/patches/fix_syntax.patch (rev 0) +++ trunk/packages/vienna-rna/trunk/debian/patches/fix_syntax.patch 2011-07-13 15:56:00 UTC (rev 7272) @@ -0,0 +1,53 @@ +Description: linitian findout spelling-error . +Author: Alex Mestiashvili <[email protected]> +Applied-Upstream: version 1.8.5 +Last-Update: 2011-07-13 + +Index: ViennaRNA-1.8.5/lib/utils.c +=================================================================== +--- ViennaRNA-1.8.5.orig/lib/utils.c ++++ ViennaRNA-1.8.5/lib/utils.c +@@ -215,7 +215,7 @@ + case ')': + p += 2; + break; +- default: nrerror("pack_structure: illegal charcter in structure"); ++ default: nrerror("pack_structure: illegal character in structure"); + } + if (i<l) i++; + } +Index: ViennaRNA-1.8.5/Cluster/AnalyseDists.1 +=================================================================== +--- ViennaRNA-1.8.5.orig/Cluster/AnalyseDists.1 ++++ ViennaRNA-1.8.5/Cluster/AnalyseDists.1 +@@ -18,7 +18,7 @@ + This matches the output format of, e.g., RNAdistance. + The input data file may contain arbitrary lines before and after the + distance matrix. All lines beginning with '> ' that are not of the +-above form are written to stdout. The programm continues reading ++above form are written to stdout. The program continues reading + until it encounters an EOF condition or the terminator character '@'. + .br + A list of taxa names can be specified in the input stream. The list +Index: ViennaRNA-1.8.5/Progs/RNAup.c +=================================================================== +--- ViennaRNA-1.8.5.orig/Progs/RNAup.c ++++ ViennaRNA-1.8.5/Progs/RNAup.c +@@ -794,7 +794,7 @@ + const char delimiters[] = " -"; + + if (strchr(unstrs,',')) +- nrerror("option -u : enter either a range using \"-\" or a comma seperated list\n"); ++ nrerror("option -u : enter either a range using \"-\" or a comma separated list\n"); + cp = strdup(unstrs); + token = strtok(cp,delimiters); + min = atoi(token); +@@ -830,7 +830,7 @@ + } else if (unstrs[0] != '\0' && strchr(unstrs,',')) { + const char delimiters[] = " ,"; + if (strchr(unstrs,'-')) +- nrerror("option -u : enter either a range using \"-\" or a comma seperated list\n"); ++ nrerror("option -u : enter either a range using \"-\" or a comma separated list\n"); + + cp = strdup(unstrs); + token = strtok (cp,delimiters); Modified: trunk/packages/vienna-rna/trunk/debian/patches/series =================================================================== --- trunk/packages/vienna-rna/trunk/debian/patches/series 2011-07-13 14:12:17 UTC (rev 7271) +++ trunk/packages/vienna-rna/trunk/debian/patches/series 2011-07-13 15:56:00 UTC (rev 7272) @@ -6,3 +6,4 @@ do_not_configure_g2-0.70.patch fix_RNAlib_info.patch naview_copyright.patch +fix_syntax.patch Modified: trunk/packages/vienna-rna/trunk/debian/vienna-rna.lintian-overrides =================================================================== --- trunk/packages/vienna-rna/trunk/debian/vienna-rna.lintian-overrides 2011-07-13 14:12:17 UTC (rev 7271) +++ trunk/packages/vienna-rna/trunk/debian/vienna-rna.lintian-overrides 2011-07-13 15:56:00 UTC (rev 7272) @@ -1,8 +1,6 @@ # Upstream has left these files in the original tarball and there was no other # reason to repack the tarball vienna-rna source: configure-generated-file-in-source RNAforester/g2-0.70/config.log -vienna-rna source: configure-generated-file-in-source RNAforester/g2-0.70/config.status - # The line is not intended to be broken vienna-rna: manpage-has-errors-from-man usr/share/man/man1/RNAup.1.gz 140: warning [p 3, 1.0i]: can't break line vienna-rna: manpage-has-errors-from-man usr/share/man/man1/AnalyseDists.1.gz 2: warning: macro `ER' not defined _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
