Author: plessy Date: 2011-08-15 05:15:41 +0000 (Mon, 15 Aug 2011) New Revision: 7461
Added: trunk/packages/ssake/tags/3.8-1/ trunk/packages/ssake/tags/3.8-1/debian/changelog trunk/packages/ssake/tags/3.8-1/debian/rules trunk/packages/ssake/tags/3.8-1/debian/ssake-examples.README.Debian Removed: trunk/packages/ssake/tags/3.8-1/debian/changelog trunk/packages/ssake/tags/3.8-1/debian/rules trunk/packages/ssake/tags/3.8-1/debian/ssake-examples.README.Debian Log: [svn-buildpackage] Tagging ssake 3.8-1 Deleted: trunk/packages/ssake/tags/3.8-1/debian/changelog =================================================================== --- trunk/packages/ssake/trunk/debian/changelog 2011-08-15 04:24:35 UTC (rev 7458) +++ trunk/packages/ssake/tags/3.8-1/debian/changelog 2011-08-15 05:15:41 UTC (rev 7461) @@ -1,69 +0,0 @@ -ssake (3.8-1) UNRELEASED; urgency=low - - * New upstream version 30% faster than the previous release. Additional - assembly control has been implemented (-w) that limits the generation of - low depth of coverage contigs - * Use Debhelper 8 (debian/control, debian/compat). - * Corrected VCS URLs (debian/control). - * Incremented Standards-Version to indicate conformance with Policy 3.9.2. - (debian/control, changes needed.) - - -- Charles Plessy <[email protected]> Mon, 15 Aug 2011 13:09:18 +0900 - -ssake (3.7-1) unstable; urgency=low - - * New upstream version - * Standards-Version: 3.9.1 (no changes needed) - * debian/rules: reflect upstream renamed testdir - - -- Andreas Tille <[email protected]> Thu, 25 Nov 2010 15:18:09 +0100 - -ssake (3.5-1) unstable; urgency=low - - * New upstream version - * debian/source/format: Switched to source format 3.0 (quilt) - * debian/control: - - Standards-Version: 3.8.4 (no changes needed) - * debian/rules - - fixed cut-n-pasto - - -- Andreas Tille <[email protected]> Thu, 24 Jun 2010 14:06:08 +0200 - -ssake (3.4-1) unstable; urgency=low - - * New upstream release. - - Fixed a bug in PET routine. User can now track read position and - individual base coverage for reads *fully embedded* within contigs, - using the -c option. - - Version 3.4 exploits paired-end reads to explore possible contig merges - within scaffolds (Consecutive contigs >= -z bases must overlap by -m - bases or more). - * debian/control: - - Incremented Standards-Version to indicate conformance with Policy 3.8.2. - (No changes needed.) - - Using the Unicode ‘prime’ character for the 3′ direction (cosmetic). - * Simplified debian/copyright according to latest discussions about the - machine-readable format. - - -- Charles Plessy <[email protected]> Tue, 23 Jun 2009 13:58:49 +0900 - -ssake (3.2.1-2) unstable; urgency=low - - * debian/control: - - ssake and ssake-exmamples now depend on ${misc:Depends}. - - ssake-examples suggests ssake instead of depending. - - Reduced redundancy in the description of ssake. - - Gave a specific description to ssake-examples. - * debian/ssake.docs, debian/reference: added BibTeX-formatted reference. - * debian/copyright: - - Corrected the identity of the upstream maintainer. - - Points to the version 2 of the GNU GPL. - - added myself to the Hall of Fame. - - -- Charles Plessy <[email protected]> Sat, 07 Mar 2009 13:42:47 +0900 - -ssake (3.2.1-1) unstable; urgency=low - - * Initial release (Closes: #506752) - - -- Andreas Tille <[email protected]> Mon, 24 Nov 2008 13:12:38 +0100 Copied: trunk/packages/ssake/tags/3.8-1/debian/changelog (from rev 7460, trunk/packages/ssake/trunk/debian/changelog) =================================================================== --- trunk/packages/ssake/tags/3.8-1/debian/changelog (rev 0) +++ trunk/packages/ssake/tags/3.8-1/debian/changelog 2011-08-15 05:15:41 UTC (rev 7461) @@ -0,0 +1,70 @@ +ssake (3.8-1) unstable; urgency=low + + * New upstream version 30% faster than the previous release. Additional + assembly control has been implemented (-w) that limits the generation of + low depth of coverage contigs. + * Use Debhelper 8 (debian/control, debian/compat). + * Corrected VCS URLs (debian/control). + * Incremented Standards-Version to indicate conformance with Policy 3.9.2. + (debian/control, changes needed.) + * Implement rudimentary regression tests (debian/rules). + + -- Charles Plessy <[email protected]> Mon, 15 Aug 2011 14:10:18 +0900 + +ssake (3.7-1) unstable; urgency=low + + * New upstream version + * Standards-Version: 3.9.1 (no changes needed) + * debian/rules: reflect upstream renamed testdir + + -- Andreas Tille <[email protected]> Thu, 25 Nov 2010 15:18:09 +0100 + +ssake (3.5-1) unstable; urgency=low + + * New upstream version + * debian/source/format: Switched to source format 3.0 (quilt) + * debian/control: + - Standards-Version: 3.8.4 (no changes needed) + * debian/rules + - fixed cut-n-pasto + + -- Andreas Tille <[email protected]> Thu, 24 Jun 2010 14:06:08 +0200 + +ssake (3.4-1) unstable; urgency=low + + * New upstream release. + - Fixed a bug in PET routine. User can now track read position and + individual base coverage for reads *fully embedded* within contigs, + using the -c option. + - Version 3.4 exploits paired-end reads to explore possible contig merges + within scaffolds (Consecutive contigs >= -z bases must overlap by -m + bases or more). + * debian/control: + - Incremented Standards-Version to indicate conformance with Policy 3.8.2. + (No changes needed.) + - Using the Unicode ‘prime’ character for the 3′ direction (cosmetic). + * Simplified debian/copyright according to latest discussions about the + machine-readable format. + + -- Charles Plessy <[email protected]> Tue, 23 Jun 2009 13:58:49 +0900 + +ssake (3.2.1-2) unstable; urgency=low + + * debian/control: + - ssake and ssake-exmamples now depend on ${misc:Depends}. + - ssake-examples suggests ssake instead of depending. + - Reduced redundancy in the description of ssake. + - Gave a specific description to ssake-examples. + * debian/ssake.docs, debian/reference: added BibTeX-formatted reference. + * debian/copyright: + - Corrected the identity of the upstream maintainer. + - Points to the version 2 of the GNU GPL. + - added myself to the Hall of Fame. + + -- Charles Plessy <[email protected]> Sat, 07 Mar 2009 13:42:47 +0900 + +ssake (3.2.1-1) unstable; urgency=low + + * Initial release (Closes: #506752) + + -- Andreas Tille <[email protected]> Mon, 24 Nov 2008 13:12:38 +0100 Deleted: trunk/packages/ssake/tags/3.8-1/debian/rules =================================================================== --- trunk/packages/ssake/trunk/debian/rules 2011-08-15 04:24:35 UTC (rev 7458) +++ trunk/packages/ssake/tags/3.8-1/debian/rules 2011-08-15 05:15:41 UTC (rev 7461) @@ -1,16 +0,0 @@ -#!/usr/bin/make -f -# debian/rules file for ssake -# (C) Andreas Tille -# GPL - -pkg=ssake -examples=$(pkg)-examples - -include /usr/share/cdbs/1/rules/debhelper.mk - -install/$(pkg):: - cp -a SSAKE `pwd`/debian/$(pkg)/usr/bin/ssake - cp -a tools/TQS.py `pwd`/debian/$(pkg)/usr/bin/tqs - -install/$(examples):: - cp -a test/* `pwd`/debian/$(examples)/usr/share/doc/$(pkg)/examples Copied: trunk/packages/ssake/tags/3.8-1/debian/rules (from rev 7459, trunk/packages/ssake/trunk/debian/rules) =================================================================== --- trunk/packages/ssake/tags/3.8-1/debian/rules (rev 0) +++ trunk/packages/ssake/tags/3.8-1/debian/rules 2011-08-15 05:15:41 UTC (rev 7461) @@ -0,0 +1,27 @@ +#!/usr/bin/make -f +# debian/rules file for ssake +# (C) Andreas Tille +# GPL + +pkg=ssake +examples=$(pkg)-examples + +include /usr/share/cdbs/1/rules/debhelper.mk + +BINDIR := $(CURDIR)/debian/$(pkg)/usr/bin +DOCDIR := $(CURDIR)/debian/$(examples)/usr/share/doc/$(pkg) + +install/$(pkg):: + cp -a SSAKE $(BINDIR)/ssake + cp -a tools/TQS.py $(BINDIR)/tqs + +install/$(examples):: + cp -a test/* $(DOCDIR)/examples + +ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS))) +TESTDIR := $(shell mktemp -d) +binary/$(pkg):: + cp -a $(DOCDIR)/examples/* $(TESTDIR) + cd $(TESTDIR) && gunzip *.gz && $(BINDIR)/ssake -f Herpesvirus_3.60kb.reads.fa -m 16 -o 2 -r 0.6 -p 0 -t 0 -c 1 -w 5 -b myFirstSSAKErun + rm -rf $(TESTDIR) +endif Deleted: trunk/packages/ssake/tags/3.8-1/debian/ssake-examples.README.Debian =================================================================== --- trunk/packages/ssake/trunk/debian/ssake-examples.README.Debian 2011-08-15 04:24:35 UTC (rev 7458) +++ trunk/packages/ssake/tags/3.8-1/debian/ssake-examples.README.Debian 2011-08-15 05:15:41 UTC (rev 7461) @@ -1,17 +0,0 @@ -SSAKE examples for Debian -========================= - -Due to the size of the examples which are provided by upstream these files -are provided in a separate binary package. You can find the files at -/usr/share/doc/ssake/examples. To test the examples just unpack these -into your working directory via - - cp -a /usr/share/doc/ssake/examples/* . - gunzip *.gz - ssake -f Herpesvirus_3.60kb.reads.fa -m 16 -o 2 -r 0.6 -p 0 -t 0 - -The resultting output file is marked with pid${PROCESSID} - you might -like to compare with the example output files. - - -- Andreas Tille <[email protected]> Mon, 24 Nov 2008 13:12:38 +0100 - \ No newline at end of file Copied: trunk/packages/ssake/tags/3.8-1/debian/ssake-examples.README.Debian (from rev 7459, trunk/packages/ssake/trunk/debian/ssake-examples.README.Debian) =================================================================== --- trunk/packages/ssake/tags/3.8-1/debian/ssake-examples.README.Debian (rev 0) +++ trunk/packages/ssake/tags/3.8-1/debian/ssake-examples.README.Debian 2011-08-15 05:15:41 UTC (rev 7461) @@ -0,0 +1,17 @@ +SSAKE examples for Debian +========================= + +Due to the size of the examples which are provided by upstream these files +are provided in a separate binary package. You can find the files at +/usr/share/doc/ssake/examples. To test the examples just unpack these +into your working directory via + + cp -a /usr/share/doc/ssake/examples/* . + gunzip *.gz + ssake -f Herpesvirus_3.60kb.reads.fa -m 16 -o 2 -r 0.6 -p 0 -t 0 -c 1 -w 5 -b myFirstSSAKErun + +The resultting output file is marked with pid${PROCESSID} - you might +like to compare with the example output files. + + -- Andreas Tille <[email protected]> Mon, 24 Nov 2008 13:12:38 +0100 + _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
