Author: lkajan-guest Date: 2011-09-28 08:48:52 +0000 (Wed, 28 Sep 2011) New Revision: 7965
Modified: trunk/packages/rostlab/profphd/trunk/debian/control Log: new long description in debian/control; changed homepage to predictprotein.org Modified: trunk/packages/rostlab/profphd/trunk/debian/control =================================================================== --- trunk/packages/rostlab/profphd/trunk/debian/control 2011-09-27 16:47:05 UTC (rev 7964) +++ trunk/packages/rostlab/profphd/trunk/debian/control 2011-09-28 08:48:52 UTC (rev 7965) @@ -8,7 +8,7 @@ Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/rostlab/profphd/trunk/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/profphd/trunk/ DM-Upload-Allowed: yes -Homepage: http://www.rostlab.org/ +Homepage: http://predictprotein.org/ Package: profphd Architecture: all @@ -16,11 +16,20 @@ Replaces: profphd-data, profphd-perl Conflicts: profphd-data, profphd-perl Description: secondary structure and solvent accessibility predictor - profphd predicts - with high accuracy - protein - + This package provides prof(1), the protein secondary structure, accessibility + and transmembrane helix predictor from Burkhard Rost. Prediction is either + done from protein sequence alone or from an alignment - the latter should be + used for optimal performance. . - * secondary structure - * solvent accessibility - * transmembrane helices + How well does prof(1) perform? . - Prediction is either done from protein sequence alone or from an alignment - - the latter should be used for optimal performance. + * Secondary structure is predicted at an expected average accuracy > 72% for + the three states helix, strand and loop. + . + * Solvent accessibility is predicted at a correlation coefficient + (correlation between experimentally observed and predicted relative + solvent accessibility) of 0.54 + . + * Transmembrane helix prediction has an expected per-residue accuracy of + about 95%. The number of false positives, i.e., transmembrane helices + predicted in globular proteins, is about 2%. _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
