Author: malat-guest
Date: 2011-10-27 15:21:33 +0000 (Thu, 27 Oct 2011)
New Revision: 8316
Added:
trunk/packages/micromanager/trunk/debian/patches/fixuplinking.patch
Modified:
trunk/packages/micromanager/trunk/debian/patches/series
Log:
fix linking issue
Added: trunk/packages/micromanager/trunk/debian/patches/fixuplinking.patch
===================================================================
--- trunk/packages/micromanager/trunk/debian/patches/fixuplinking.patch
(rev 0)
+++ trunk/packages/micromanager/trunk/debian/patches/fixuplinking.patch
2011-10-27 15:21:33 UTC (rev 8316)
@@ -0,0 +1,26 @@
+Without this patch here is what I get:
+
+$ ldd -r /usr/lib/jni/libMMCoreJ_wrap.so
+[...]
+undefined symbol: pthread_mutexattr_settype
(/usr/lib/jni/libMMCoreJ_wrap.so)
+undefined symbol: deflate (/usr/lib/jni/libMMCoreJ_wrap.so)
+undefined symbol: deflateEnd (/usr/lib/jni/libMMCoreJ_wrap.so)
+undefined symbol: pthread_mutexattr_destroy
(/usr/lib/jni/libMMCoreJ_wrap.so)
+undefined symbol: pthread_create (/usr/lib/jni/libMMCoreJ_wrap.so)
+undefined symbol: pthread_mutexattr_init
(/usr/lib/jni/libMMCoreJ_wrap.so)
+undefined symbol: deflateInit2_ (/usr/lib/jni/libMMCoreJ_wrap.so)
+undefined symbol: pthread_join (/usr/lib/jni/libMMCoreJ_wrap.so)
+
+Index: micromanager-1.4.6/MMCoreJ_wrap/Makefile.am
+===================================================================
+--- micromanager-1.4.6.orig/MMCoreJ_wrap/Makefile.am 2011-10-27
17:17:25.000000000 -0400
++++ micromanager-1.4.6/MMCoreJ_wrap/Makefile.am 2011-10-27
17:18:03.000000000 -0400
+@@ -36,7 +36,7 @@
+ $(top_srcdir)/MMCore/Host.cpp
+
+ #not sure if Boost linking is needed
+-libMMCoreJ_wrap_la_LDFLAGS = -Wl, -module -ldl $(BOOST_LDFLAGS)
++libMMCoreJ_wrap_la_LDFLAGS = -Wl, -module -ldl $(BOOST_LDFLAGS) $(LPTHREAD)
$(LIBZLIB)
+
+ $(srcdir)/MMCoreJ.jar: MMCoreJ_wrap.cxx \
+ libMMCoreJ_wrap.la \
Modified: trunk/packages/micromanager/trunk/debian/patches/series
===================================================================
--- trunk/packages/micromanager/trunk/debian/patches/series 2011-10-27
14:51:24 UTC (rev 8315)
+++ trunk/packages/micromanager/trunk/debian/patches/series 2011-10-27
15:21:33 UTC (rev 8316)
@@ -4,3 +4,4 @@
fixupfreeimage.patch
fixupgphoto2.patch
removeinstallrule.patch
+fixuplinking.patch
_______________________________________________
debian-med-commit mailing list
[email protected]
http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
