The following commit has been merged in the master branch:
commit a36daf1413f261751a170ec8bf00d410312b9df1
Author: Charles Plessy <[email protected]>
Date:   Wed Nov 16 13:17:54 2011 +0900

    Rely on dpkg-dev for patching and removed build-dependancy on quilt.
    
    I still think that format 3.0 (quilt) is very bad taste and
    complicates my work, but let's standardise.

diff --git a/debian/README.source b/debian/README.source
index 9d28070..2c5154b 100644
--- a/debian/README.source
+++ b/debian/README.source
@@ -1,2 +1 @@
-This package uses the ‘quilt’ program to patch the original upstream sources.
-This is documented in ‘/usr/share/doc/quilt/README.source’.
+This package uses dpkg-source(1) to patch the original upstream sources.
diff --git a/debian/control b/debian/control
index a8e54bf..7ac7cfc 100644
--- a/debian/control
+++ b/debian/control
@@ -5,7 +5,7 @@ Maintainer: Debian Med Packaging Team 
<[email protected].
 DM-Upload-Allowed: yes
 Uploaders: Steffen Moeller <[email protected]>, Charles Plessy 
<[email protected]>,
  Andreas Tille <[email protected]>
-Build-Depends: debhelper (>= 8), libqt4-dev, quilt
+Build-Depends: debhelper (>= 8), libqt4-dev
 Standards-Version: 3.9.2
 Vcs-Browser: http://git.debian.org/?p=debian-med/clustalx.git
 Vcs-Git: git://git.debian.org/debian-med/clustalx.git
diff --git a/debian/rules b/debian/rules
index b905071..57e8815 100755
--- a/debian/rules
+++ b/debian/rules
@@ -1,14 +1,12 @@
 #!/usr/bin/make -f
 
-include /usr/share/quilt/quilt.make
-
 build: build-stamp
-build-stamp: patch
+build-stamp:
        dh_testdir
        qmake-qt4
        dh build
 
-clean: unpatch
+clean:
        $(RM) moc_*
        dh clean
 

-- 
Multiple alignment of nucleic acid and protein sequences (graphical interface)

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