The following commit has been merged in the master branch:
commit 3a3fa73638fd5086e17ff6b626052ddc3502571f
Author: Alexandre Mestiashvili <[email protected]>
Date: Thu Jan 5 15:14:31 2012 +0100
Fixed spelling error.
diff --git a/debian/patches/0001-fix_spelling.patch
b/debian/patches/0001-fix_spelling.patch
index 79af4f2..d3cca57 100644
--- a/debian/patches/0001-fix_spelling.patch
+++ b/debian/patches/0001-fix_spelling.patch
@@ -1,5 +1,5 @@
From: Debian Med Packaging Team <[email protected]>
-Date: Sat, 10 Dec 2011 12:02:53 +0100
+Date: 2012-01-05
Subject: fix_spelling
---
@@ -7,11 +7,9 @@ Subject: fix_spelling
src/locfit/lfd.c | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
-diff --git a/src/locfit/arith.c b/src/locfit/arith.c
-index 536a78c..2a6c66c 100644
---- a/src/locfit/arith.c
-+++ b/src/locfit/arith.c
-@@ -410,7 +410,7 @@ double (*f)();
+--- cufflinks.orig/src/locfit/arith.c
++++ cufflinks/src/locfit/arith.c
+@@ -410,7 +410,7 @@
INT i;
if (l==NULL)
{
@@ -20,11 +18,9 @@ index 536a78c..2a6c66c 100644
return NULL;
}
v = createvar("_vvec1",STHIDDEN,l->n,VDOUBLE);
-diff --git a/src/locfit/lfd.c b/src/locfit/lfd.c
-index 4a6b74b..912670a 100644
---- a/src/locfit/lfd.c
-+++ b/src/locfit/lfd.c
-@@ -78,7 +78,7 @@ INT fp;
+--- cufflinks.orig/src/locfit/lfd.c
++++ cufflinks/src/locfit/lfd.c
+@@ -78,7 +78,7 @@
}
}
if (access("LFData",W_OK)==-1)
@@ -33,4 +29,14 @@ index 4a6b74b..912670a 100644
return(0);
}
}
---
+--- cufflinks.orig/src/abundances.cpp
++++ cufflinks/src/abundances.cpp
+@@ -1751,7 +1751,7 @@
+
+ vector<double> gammas;
+
+- verbose_msg( "Calculating intial MLE\n");
++ verbose_msg( "Calculating initial MLE\n");
+
+ AbundanceStatus mle_success = gamma_mle(mapped_transcripts,
+ nr_alignments,
--
Transcript assembly, differential expression, and differential regulation for
RNA-Seq.
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