Author: tbooth-guest Date: 2012-01-05 18:34:50 +0000 (Thu, 05 Jan 2012) New Revision: 9177
Added: trunk/packages/macs/ trunk/packages/macs/trunk/ trunk/packages/macs/trunk/debian/ trunk/packages/macs/trunk/debian/README.Debian trunk/packages/macs/trunk/debian/README.source trunk/packages/macs/trunk/debian/changelog trunk/packages/macs/trunk/debian/compat trunk/packages/macs/trunk/debian/control trunk/packages/macs/trunk/debian/copyright trunk/packages/macs/trunk/debian/docs trunk/packages/macs/trunk/debian/rules trunk/packages/macs/trunk/debian/source/ trunk/packages/macs/trunk/debian/source/format trunk/packages/macs/trunk/debian/watch Log: Packaging of macs - new package by Tim and Soon Added: trunk/packages/macs/trunk/debian/README.Debian =================================================================== --- trunk/packages/macs/trunk/debian/README.Debian (rev 0) +++ trunk/packages/macs/trunk/debian/README.Debian 2012-01-05 18:34:50 UTC (rev 9177) @@ -0,0 +1,6 @@ +macs for Debian +--------------- + +<possible notes regarding this package - if none, delete this file> + + -- H. Soon Gweon (Key for package building) <[email protected]> Thu, 05 Jan 2012 10:52:22 +0000 Added: trunk/packages/macs/trunk/debian/README.source =================================================================== --- trunk/packages/macs/trunk/debian/README.source (rev 0) +++ trunk/packages/macs/trunk/debian/README.source 2012-01-05 18:34:50 UTC (rev 9177) @@ -0,0 +1,9 @@ +macs for Debian +--------------- + +<this file describes information about the source package, see Debian policy +manual section 4.14. You WILL either need to modify or delete this file> + + + + Added: trunk/packages/macs/trunk/debian/changelog =================================================================== --- trunk/packages/macs/trunk/debian/changelog (rev 0) +++ trunk/packages/macs/trunk/debian/changelog 2012-01-05 18:34:50 UTC (rev 9177) @@ -0,0 +1,19 @@ +macs (2.0.9.1-1ubuntu3) lucid; urgency=low + + * Fix typo in debian/rules + + -- Tim Booth <[email protected]> Thu, 05 Jan 2012 18:22:46 +0000 + +macs (2.0.9.1-1ubuntu2) lucid; urgency=low + + * Package for PPA + * Packaged from version 2.0.9-1 + * Changed debian/rules to override dh_auto_clean to remove *.c files + + -- H. Soon Gweon (Key for package building) <[email protected]> Thu, 05 Jan 2012 13:10:02 +0000 + +macs (2.0.9.1-1) unstable; urgency=low + + * Initial release (Closes: #nnnn) <nnnn is the bug number of your ITP> + + -- H. Soon Gweon (Key for package building) <[email protected]> Thu, 05 Jan 2012 10:52:22 +0000 Added: trunk/packages/macs/trunk/debian/compat =================================================================== --- trunk/packages/macs/trunk/debian/compat (rev 0) +++ trunk/packages/macs/trunk/debian/compat 2012-01-05 18:34:50 UTC (rev 9177) @@ -0,0 +1 @@ +8 Added: trunk/packages/macs/trunk/debian/control =================================================================== --- trunk/packages/macs/trunk/debian/control (rev 0) +++ trunk/packages/macs/trunk/debian/control 2012-01-05 18:34:50 UTC (rev 9177) @@ -0,0 +1,22 @@ +Source: macs +Section: science +Priority: extra +Maintainer: Tim Booth <[email protected]>, H. Soon Gweon <[email protected]> +Build-Depends: debhelper (>= 8.0.0), cython (>= 0.15), python-dev +Standards-Version: 3.9.2 +Homepage: https://github.com/taoliu/MACS/ +#Vcs-Git: git://git.debian.org/collab-maint/macs.git +#Vcs-Browser: http://git.debian.org/?p=collab-maint/macs.git;a=summary + +Package: macs +Architecture: any +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: Model-based Analysis of ChIP-Seq on short reads sequencers + MACS empirically models the length of the sequenced ChIP fragments, which + tends to be shorter than sonication or library construction size estimates, + and uses it to improve the spatial resolution of predicted binding sites. + MACS also uses a dynamic Poisson distribution to effectively capture local + biases in the genome sequence, allowing for more sensitive and robust + prediction. MACS compares favorably to existing ChIP-Seq peak-finding + algorithms, is publicly available open source, and can be used for ChIP-Seq + with or without control samples. Added: trunk/packages/macs/trunk/debian/copyright =================================================================== --- trunk/packages/macs/trunk/debian/copyright (rev 0) +++ trunk/packages/macs/trunk/debian/copyright 2012-01-05 18:34:50 UTC (rev 9177) @@ -0,0 +1,10 @@ +Format: http://dep.debian.net/deps/dep5 +Upstream-Name: macs +Source: https://github.com/taoliu/MACS/downloads + +Files: * +Copyright: 2008 Zhang et al. +License: This software is distributed under the terms of Artistic License. +The complete text of the Artistic License can be found in +'http://liulab.dfci.harvard.edu/MACS/COPYING' + Added: trunk/packages/macs/trunk/debian/docs =================================================================== --- trunk/packages/macs/trunk/debian/docs (rev 0) +++ trunk/packages/macs/trunk/debian/docs 2012-01-05 18:34:50 UTC (rev 9177) @@ -0,0 +1 @@ +README Added: trunk/packages/macs/trunk/debian/rules =================================================================== --- trunk/packages/macs/trunk/debian/rules (rev 0) +++ trunk/packages/macs/trunk/debian/rules 2012-01-05 18:34:50 UTC (rev 9177) @@ -0,0 +1,17 @@ +#!/usr/bin/make -f +# -*- makefile -*- +# Sample debian/rules that uses debhelper. +# This file was originally written by Joey Hess and Craig Small. +# As a special exception, when this file is copied by dh-make into a +# dh-make output file, you may use that output file without restriction. +# This special exception was added by Craig Small in version 0.37 of dh-make. + +# Uncomment this to turn on verbose mode. +#export DH_VERBOSE=1 + +%: + dh $@ + +override_dh_auto_clean: + dh_auto_clean + find -type f -name '*.c' -exec rm -f '{}' ';' Property changes on: trunk/packages/macs/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/macs/trunk/debian/source/format =================================================================== --- trunk/packages/macs/trunk/debian/source/format (rev 0) +++ trunk/packages/macs/trunk/debian/source/format 2012-01-05 18:34:50 UTC (rev 9177) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/macs/trunk/debian/watch =================================================================== --- trunk/packages/macs/trunk/debian/watch (rev 0) +++ trunk/packages/macs/trunk/debian/watch 2012-01-05 18:34:50 UTC (rev 9177) @@ -0,0 +1,24 @@ +# Example watch control file for uscan +# Rename this file to "watch" and then you can run the "uscan" command +# to check for upstream updates and more. +# See uscan(1) for format + +# Compulsory line, this is a version 3 file +version=3 + +# Uncomment to examine a Webpage +# <Webpage URL> <string match> +opts="uversionmangle=s/-/./" \ +https://github.com/taoliu/MACS/downloads /downloads/.*/MACS/MACS-(.*)\.tar\.gz + +# Uncomment to examine a Webserver directory +#http://www.example.com/pub/macs-(.*)\.tar\.gz + +# Uncommment to examine a FTP server +#ftp://ftp.example.com/pub/macs-(.*)\.tar\.gz debian uupdate + +# Uncomment to find new files on sourceforge, for devscripts >= 2.9 +# http://sf.net/macs/macs-(.*)\.tar\.gz + +# Uncomment to find new files on GooglePages +# http://example.googlepages.com/foo.html macs-(.*)\.tar\.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
