The following commit has been merged in the master branch:
commit fb427920067339c79277cbc8bcd81d80781ba5c5
Author: Charles Plessy <[email protected]>
Date: Tue Jan 10 08:38:37 2012 +0900
Updated debian/sra-toolkit-libs0.symbols.
diff --git a/debian/sra-toolkit-libs0.symbols b/debian/sra-toolkit-libs0.symbols
index 08a4959..c8a2e13 100644
--- a/debian/sra-toolkit-libs0.symbols
+++ b/debian/sra-toolkit-libs0.symbols
@@ -1,3 +1,112 @@
+libalign-access.so.1 sra-toolkit-libs0 #MINVER#
+ AlignAccessAlignmentEnumeratorAddRef@Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetBAMAlignment@Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetCIGAR@Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetIsFirstInPair@Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetIsPaired@Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetIsSecondInPair@Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetMapQuality@Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetRecordID@Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetRefSeqID@Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetRefSeqPos@Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetShortSeqAccessionID@Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetShortSeqID@Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetShortSequence@Base 2.1.7a
+ AlignAccessAlignmentEnumeratorGetStrandDirection@Base 2.1.7a
+ AlignAccessAlignmentEnumeratorNext@Base 2.1.7a
+ AlignAccessAlignmentEnumeratorRelease@Base 2.1.7a
+ AlignAccessDBAddRef@Base 2.1.7a
+ AlignAccessDBEnumerateAlignments@Base 2.1.7a
+ AlignAccessDBEnumerateRefSequences@Base 2.1.7a
+ AlignAccessDBExportBAMFile@Base 2.1.7a
+ AlignAccessDBRelease@Base 2.1.7a
+ AlignAccessDBWindowedAlignments@Base 2.1.7a
+ AlignAccessMgrAddRef@Base 2.1.7a
+ AlignAccessMgrMake@Base 2.1.7a
+ AlignAccessMgrMakeBAMDB@Base 2.1.7a
+ AlignAccessMgrMakeIndexBAMDB@Base 2.1.7a
+ AlignAccessMgrRelease@Base 2.1.7a
+ AlignAccessRefSeqEnumeratorAddRef@Base 2.1.7a
+ AlignAccessRefSeqEnumeratorGetID@Base 2.1.7a
+ AlignAccessRefSeqEnumeratorGetLength@Base 2.1.7a
+ AlignAccessRefSeqEnumeratorNext@Base 2.1.7a
+ AlignAccessRefSeqEnumeratorRelease@Base 2.1.7a
+ BAMAlignmentAddRef@Base 2.1.7a
+ BAMAlignmentGetAlignmentDetail@Base 2.1.7a
+ BAMAlignmentGetCSKey@Base 2.1.7a
+ BAMAlignmentGetCSSequence@Base 2.1.7a
+ BAMAlignmentGetCigar@Base 2.1.7a
+ BAMAlignmentGetCigarCount@Base 2.1.7a
+ BAMAlignmentGetFlags@Base 2.1.7a
+ BAMAlignmentGetInsertSize@Base 2.1.7a
+ BAMAlignmentGetMapQuality@Base 2.1.7a
+ BAMAlignmentGetMatePosition@Base 2.1.7a
+ BAMAlignmentGetMateRefSeqId@Base 2.1.7a
+ BAMAlignmentGetPosition2@Base 2.1.7a
+ BAMAlignmentGetPosition@Base 2.1.7a
+ BAMAlignmentGetQuality2@Base 2.1.7a
+ BAMAlignmentGetQuality@Base 2.1.7a
+ BAMAlignmentGetRawCigar@Base 2.1.7a
+ BAMAlignmentGetReadGroupName@Base 2.1.7a
+ BAMAlignmentGetReadLength@Base 2.1.7a
+ BAMAlignmentGetReadName2@Base 2.1.7a
+ BAMAlignmentGetReadName@Base 2.1.7a
+ BAMAlignmentGetRefSeqId@Base 2.1.7a
+ BAMAlignmentGetSequence2@Base 2.1.7a
+ BAMAlignmentGetSequence@Base 2.1.7a
+ BAMAlignmentHasColorSpace@Base 2.1.7a
+ BAMAlignmentIsMapped@Base 2.1.7a
+ BAMAlignmentOptDataForEach@Base 2.1.7a
+ BAMAlignmentRelease@Base 2.1.7a
+ BAMFileAddRef@Base 2.1.7a
+ BAMFileGetHeaderText@Base 2.1.7a
+ BAMFileGetPosition@Base 2.1.7a
+ BAMFileGetProportionalPosition@Base 2.1.7a
+ BAMFileGetReadGroup@Base 2.1.7a
+ BAMFileGetReadGroupByName@Base 2.1.7a
+ BAMFileGetReadGroupCount@Base 2.1.7a
+ BAMFileGetRefSeq@Base 2.1.7a
+ BAMFileGetRefSeqById@Base 2.1.7a
+ BAMFileGetRefSeqCount@Base 2.1.7a
+ BAMFileIndexHasRefSeqId@Base 2.1.7a
+ BAMFileIsIndexed@Base 2.1.7a
+ BAMFileMake@Base 2.1.7a
+ BAMFileMakeWithDir@Base 2.1.7a
+ BAMFileMakeWithKFile@Base 2.1.7a
+ BAMFileMakeWithKPath@Base 2.1.7a
+ BAMFileOpenIndex@Base 2.1.7a
+ BAMFileOpenIndexWithKPath@Base 2.1.7a
+ BAMFileRead@Base 2.1.7a
+ BAMFileRelease@Base 2.1.7a
+ BAMFileRewind@Base 2.1.7a
+ BAMFileSeek@Base 2.1.7a
+ BAMFileSetPosition@Base 2.1.7a
+ BAMFileVMakeWithDir@Base 2.1.7a
+ BAMValidate@Base 2.1.7a
+libalign-reader.so.1 sra-toolkit-libs0 #MINVER#
+ RefSeqMgr_Exists@Base 2.1.7a
+ RefSeqMgr_ForEachVolume@Base 2.1.7a
+ RefSeqMgr_GetSeq@Base 2.1.7a
+ RefSeqMgr_Make@Base 2.1.7a
+ RefSeqMgr_Read@Base 2.1.7a
+ RefSeqMgr_Release@Base 2.1.7a
+ RefSeq_Circular@Base 2.1.7a
+ RefSeq_MD5@Base 2.1.7a
+ RefSeq_Read@Base 2.1.7a
+ RefSeq_Release@Base 2.1.7a
+ RefSeq_SeqLength@Base 2.1.7a
+ TableReaderRefSeq_Circular@Base 2.1.7a
+ TableReaderRefSeq_MD5@Base 2.1.7a
+ TableReaderRefSeq_MakePath@Base 2.1.7a
+ TableReaderRefSeq_MakeTable@Base 2.1.7a
+ TableReaderRefSeq_Read@Base 2.1.7a
+ TableReaderRefSeq_SeqId@Base 2.1.7a
+ TableReaderRefSeq_SeqLength@Base 2.1.7a
+ TableReaderRefSeq_Whack@Base 2.1.7a
+ TableReader_IdRange@Base 2.1.7a
+ TableReader_Make@Base 2.1.7a
+ TableReader_ReadRow@Base 2.1.7a
+ TableReader_Whack@Base 2.1.7a
libkdb.so.1 sra-toolkit-libs0 #MINVER#
DirectoryCheckMD5@Base 2.0.1
KBTreeAddRef@Base 2.0.1
@@ -9,9 +118,9 @@ libkdb.so.1 sra-toolkit-libs0 #MINVER#
KBTreeMakeUpdate@Base 2.0.1
KBTreeRelease@Base 2.0.1
KBTreeSize@Base 2.0.1
- KBTreeValueAccessRead@Base 2.0.1
- KBTreeValueAccessUpdate@Base 2.0.1
- KBTreeValueWhack@Base 2.0.1
+#MISSING: 2.1.7a# KBTreeValueAccessRead@Base 2.0.1
+#MISSING: 2.1.7a# KBTreeValueAccessUpdate@Base 2.0.1
+#MISSING: 2.1.7a# KBTreeValueWhack@Base 2.0.1
KColBlockLocAllocSize@Base 2.0.1
KColBlockLocEntryCount@Base 2.0.1
KColIdxBlockInit@Base 2.0.1
@@ -94,12 +203,15 @@ libkdb.so.1 sra-toolkit-libs0 #MINVER#
KDBWritable@Base 2.0.1
KDatabaseAddRef@Base 2.0.1
KDatabaseAttach@Base 2.0.1
+ KDatabaseConsistencyCheck@Base 2.1.7a
KDatabaseExists@Base 2.0.1
KDatabaseListDB@Base 2.0.1
KDatabaseListIdx@Base 2.0.1
KDatabaseListTbl@Base 2.0.1
KDatabaseLocked@Base 2.0.1
+ KDatabaseModDate@Base 2.1.7a
KDatabaseOpenDBRead@Base 2.0.1
+ KDatabaseOpenDirectoryRead@Base 2.1.7a
KDatabaseOpenIndexRead@Base 2.0.1
KDatabaseOpenManagerRead@Base 2.0.1
KDatabaseOpenMetadataRead@Base 2.0.1
@@ -214,6 +326,8 @@ libkdb.so.1 sra-toolkit-libs0 #MINVER#
KU64IndexWhack_v3@Base 2.0.1
libkfg.so.1 sra-toolkit-libs0 #MINVER#
KConfigAddRef@Base 2.0.1
+ KConfigGetLoadPath@Base 2.1.7a
+ KConfigListIncluded@Base 2.1.7a
KConfigLoadFile@Base 2.0.1
KConfigMake@Base 2.0.1
KConfigNodeAddRef@Base 2.0.1
@@ -221,6 +335,7 @@ libkfg.so.1 sra-toolkit-libs0 #MINVER#
KConfigNodeDropAll@Base 2.0.1
KConfigNodeDropAttr@Base 2.0.1
KConfigNodeDropChild@Base 2.0.1
+ KConfigNodeListChild@Base 2.1.7a
KConfigNodeOpenNodeRead@Base 2.0.1
KConfigNodeOpenNodeUpdate@Base 2.0.1
KConfigNodeRead@Base 2.0.1
@@ -447,6 +562,10 @@ libkfs.so.1 sra-toolkit-libs0 #MINVER#
KMemBankSetSize@Base 2.0.1
KMemBankSize@Base 2.0.1
KMemBankWrite@Base 2.0.1
+ KPOptionCmp@Base 2.1.7a
+ KPOptionMake@Base 2.1.7a
+ KPOptionSort@Base 2.1.7a
+ KPOptionWhack@Base 2.1.7a
KPageAccessRead@Base 2.0.1
KPageAccessUpdate@Base 2.0.1
KPageAddRef@Base 2.0.1
@@ -463,6 +582,22 @@ libkfs.so.1 sra-toolkit-libs0 #MINVER#
KPageFileSize@Base 2.0.1
KPageId@Base 2.0.1
KPageRelease@Base 2.0.1
+ KPathAddRef@Base 2.1.7a
+ KPathDestroy@Base 2.1.7a
+ KPathGetCWD@Base 2.1.7a
+ KPathMake@Base 2.1.7a
+ KPathMakeCurrentPath@Base 2.1.7a
+ KPathMakeFmt@Base 2.1.7a
+ KPathMakeRelative@Base 2.1.7a
+ KPathMakeSysPath@Base 2.1.7a
+ KPathMakeVFmt@Base 2.1.7a
+ KPathOption@Base 2.1.7a
+ KPathReadFragment@Base 2.1.7a
+ KPathReadPath@Base 2.1.7a
+ KPathReadQuery@Base 2.1.7a
+ KPathRelease@Base 2.1.7a
+ KPathTransformPathHier@Base 2.1.7a
+ KPathTransformSysPath@Base 2.1.7a
KSymAddrAddRef@Base 2.0.1
KSymAddrAsFunc@Base 2.0.1
KSymAddrAsObj@Base 2.0.1
@@ -584,6 +719,7 @@ libklib.so.1 sra-toolkit-libs0 #MINVER#
GetRCStateText@Base 2.0.1
GetRCTargetIdxText@Base 2.0.1
GetRCTargetText@Base 2.0.1
+ GetUnreadRCInfo@Base 2.1.7a
KDataBufferCast@Base 2.0.1
KDataBufferCheckIntegrity@Base 2.0.1
KDataBufferMake@Base 2.0.1
@@ -705,6 +841,9 @@ libklib.so.1 sra-toolkit-libs0 #MINVER#
KSymbolMake@Base 2.0.1
KSymbolSort@Base 2.0.1
KSymbolWhack@Base 2.0.1
+ KTimeGlobal@Base 2.1.7a
+ KTimeLocal@Base 2.1.7a
+ KTimeStamp@Base 2.1.7a
KTokenSourceConsume@Base 2.0.1
KTokenSourceReturn@Base 2.0.1
KTokenToF64@Base 2.0.1
@@ -716,6 +855,7 @@ libklib.so.1 sra-toolkit-libs0 #MINVER#
KTokenToVersion@Base 2.0.1
KTokenToWideString@Base 2.0.1
KTokenizerNext@Base 2.0.1
+ KWrtFmt_error_code@Base 2.1.7a
KWrtFmt_rc_t@Base 2.0.1
KWrtInit@Base 2.0.1
KWrtSysInit@Base 2.0.1
@@ -1202,6 +1342,7 @@ libsradb.so.3 sra-toolkit-libs0 #MINVER#
SRAMgrMakeRead@Base 2.0.1
SRAMgrMakeReadWithDir@Base 2.0.1
SRAMgrMakeSRASchema@Base 2.0.1
+ SRAMgrOpenAltTableRead@Base 2.1.7a
SRAMgrOpenDatatypesRead@Base 2.0.1
SRAMgrOpenTableRead@Base 2.0.1
SRAMgrRelease@Base 2.0.1
@@ -1579,6 +1720,7 @@ libvdb.so.2 sra-toolkit-libs0 #MINVER#
VCursorCloseRow@Base 2.0.1
VCursorCloseRowRead@Base 2.0.1
VCursorDatatype@Base 2.0.1
+ VCursorDestroy@Base 2.1.7a
VCursorGetColumnIdx@Base 2.0.1
VCursorGetSchema@Base 2.0.1
VCursorGetUserData@Base 2.0.1
@@ -1611,6 +1753,7 @@ libvdb.so.2 sra-toolkit-libs0 #MINVER#
VCursorSupplementSchema@Base 2.0.1
VCursorVAddColumn@Base 2.0.1
VCursorVGetColumnIdx@Base 2.0.1
+ VCursorWhack@Base 2.1.7a
VDBManagerAddLoadLibraryPath@Base 2.0.1
VDBManagerAddRef@Base 2.0.1
VDBManagerAddSchemaIncludePath@Base 2.0.1
@@ -1648,10 +1791,12 @@ libvdb.so.2 sra-toolkit-libs0 #MINVER#
VDatabaseOpenManagerRead@Base 2.0.1
VDatabaseOpenMetadataRead@Base 2.0.1
VDatabaseOpenParentRead@Base 2.0.1
+ VDatabaseOpenSchema@Base 2.1.7a
VDatabaseOpenTableRead@Base 2.0.1
VDatabaseRelease@Base 2.0.1
VDatabaseSetUserData@Base 2.0.1
VDatabaseSever@Base 2.0.1
+ VDatabaseTypespec@Base 2.1.7a
VDatabaseVOpenDBRead@Base 2.0.1
VDatabaseVOpenTableRead@Base 2.0.1
VDatabaseVWritable@Base 2.0.1
@@ -1867,6 +2012,7 @@ libvdb.so.2 sra-toolkit-libs0 #MINVER#
vardim_type_expr@Base 2.0.1
vdb_cast@Base 2.0.1
vdb_compare@Base 2.0.1
+ vdb_detranspose@Base 2.1.7a
vdb_fixed_row_len@Base 2.0.1
vdb_hello@Base 2.0.1
vdb_merge@Base 2.0.1
@@ -1879,6 +2025,7 @@ libvdb.so.2 sra-toolkit-libs0 #MINVER#
vdb_row_len@Base 2.0.1
vdb_select@Base 2.0.1
vdb_split@Base 2.0.1
+ vdb_transpose@Base 2.1.7a
libwkdb.so.1 sra-toolkit-libs0 #MINVER#
KBTreeAddRef@Base 2.0.1
KBTreeDropBacking@Base 2.0.1
@@ -1889,9 +2036,9 @@ libwkdb.so.1 sra-toolkit-libs0 #MINVER#
KBTreeMakeUpdate@Base 2.0.1
KBTreeRelease@Base 2.0.1
KBTreeSize@Base 2.0.1
- KBTreeValueAccessRead@Base 2.0.1
- KBTreeValueAccessUpdate@Base 2.0.1
- KBTreeValueWhack@Base 2.0.1
+#MISSING: 2.1.7a# KBTreeValueAccessRead@Base 2.0.1
+#MISSING: 2.1.7a# KBTreeValueAccessUpdate@Base 2.0.1
+#MISSING: 2.1.7a# KBTreeValueWhack@Base 2.0.1
KColBlockLocAllocSize@Base 2.0.1
KColBlockLocEntryCount@Base 2.0.1
KColBlockLocInfoMerge@Base 2.0.1
@@ -2070,8 +2217,11 @@ libwkdb.so.1 sra-toolkit-libs0 #MINVER#
KDatabaseListTbl@Base 2.0.1
KDatabaseLock@Base 2.0.1
KDatabaseLocked@Base 2.0.1
+ KDatabaseModDate@Base 2.1.7a
KDatabaseOpenDBRead@Base 2.0.1
KDatabaseOpenDBUpdate@Base 2.0.1
+ KDatabaseOpenDirectoryRead@Base 2.1.7a
+ KDatabaseOpenDirectoryUpdate@Base 2.1.7a
KDatabaseOpenIndexRead@Base 2.0.1
KDatabaseOpenIndexUpdate@Base 2.0.1
KDatabaseOpenManagerRead@Base 2.0.1
@@ -2287,6 +2437,7 @@ libwsradb.so.3 sra-toolkit-libs0 #MINVER#
SRAMgrMake@Base 2.0.1
SRAMgrMakeSRASchema@Base 2.0.1
SRAMgrMakeUpdate@Base 2.0.1
+ SRAMgrOpenAltTableRead@Base 2.1.7a
SRAMgrOpenTableRead@Base 2.0.1
SRAMgrOpenTableUpdate@Base 2.0.1
SRAMgrRelease@Base 2.0.1
@@ -2609,6 +2760,7 @@ libwvdb.so.2 sra-toolkit-libs0 #MINVER#
VCursorCommitRow@Base 2.0.1
VCursorDatatype@Base 2.0.1
VCursorDefault@Base 2.0.1
+ VCursorDestroy@Base 2.1.7a
VCursorFlushPage@Base 2.0.1
VCursorGetColumnIdx@Base 2.0.1
VCursorGetSchema@Base 2.0.1
@@ -2644,6 +2796,7 @@ libwvdb.so.2 sra-toolkit-libs0 #MINVER#
VCursorSupplementSchema@Base 2.0.1
VCursorVAddColumn@Base 2.0.1
VCursorVGetColumnIdx@Base 2.0.1
+ VCursorWhack@Base 2.1.7a
VCursorWrite@Base 2.0.1
VDBManagerAddLoadLibraryPath@Base 2.0.1
VDBManagerAddRef@Base 2.0.1
@@ -2686,6 +2839,7 @@ libwvdb.so.2 sra-toolkit-libs0 #MINVER#
VDBMemRelease@Base 2.0.1
VDatabaseAddRef@Base 2.0.1
VDatabaseAttach@Base 2.0.1
+ VDatabaseColumnCreateParams@Base 2.1.7a
VDatabaseCreateDB@Base 2.0.1
VDatabaseCreateTable@Base 2.0.1
VDatabaseDropDB@Base 2.0.1
@@ -2707,12 +2861,14 @@ libwvdb.so.2 sra-toolkit-libs0 #MINVER#
VDatabaseOpenMetadataUpdate@Base 2.0.1
VDatabaseOpenParentRead@Base 2.0.1
VDatabaseOpenParentUpdate@Base 2.0.1
+ VDatabaseOpenSchema@Base 2.1.7a
VDatabaseOpenTableRead@Base 2.0.1
VDatabaseOpenTableUpdate@Base 2.0.1
VDatabaseRelease@Base 2.0.1
VDatabaseSetUserData@Base 2.0.1
VDatabaseSever@Base 2.0.1
VDatabaseStoreSchema@Base 2.0.1
+ VDatabaseTypespec@Base 2.1.7a
VDatabaseUnlock@Base 2.0.1
VDatabaseVCreateDB@Base 2.0.1
VDatabaseVCreateTable@Base 2.0.1
@@ -2970,6 +3126,7 @@ libwvdb.so.2 sra-toolkit-libs0 #MINVER#
vardim_type_expr@Base 2.0.1
vdb_cast@Base 2.0.1
vdb_compare@Base 2.0.1
+ vdb_detranspose@Base 2.1.7a
vdb_fixed_row_len@Base 2.0.1
vdb_hello@Base 2.0.1
vdb_merge@Base 2.0.1
@@ -2982,3 +3139,4 @@ libwvdb.so.2 sra-toolkit-libs0 #MINVER#
vdb_row_len@Base 2.0.1
vdb_select@Base 2.0.1
vdb_split@Base 2.0.1
+ vdb_transpose@Base 2.1.7a
--
Utilities for the NCBI Sequence Read Archive
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