Author: lkajan-guest Date: 2012-01-10 14:14:23 +0000 (Tue, 10 Jan 2012) New Revision: 9233
Added: trunk/packages/rostlab/reprof/ trunk/packages/rostlab/reprof/tags/ trunk/packages/rostlab/reprof/trunk/ trunk/packages/rostlab/reprof/trunk/debian/ trunk/packages/rostlab/reprof/trunk/debian/changelog trunk/packages/rostlab/reprof/trunk/debian/compat trunk/packages/rostlab/reprof/trunk/debian/control trunk/packages/rostlab/reprof/trunk/debian/copyright trunk/packages/rostlab/reprof/trunk/debian/librg-reprof-bundle-perl.install trunk/packages/rostlab/reprof/trunk/debian/patches/ trunk/packages/rostlab/reprof/trunk/debian/reprof.install trunk/packages/rostlab/reprof/trunk/debian/rules trunk/packages/rostlab/reprof/trunk/debian/source/ trunk/packages/rostlab/reprof/trunk/debian/source/format trunk/packages/rostlab/reprof/trunk/debian/watch Modified: trunk/packages/rostlab/librg-utils-perl/tags/ trunk/packages/rostlab/librg-utils-perl/trunk/debian/changelog Log: added reprof tool: a secondary structure and accessibility predictor from Peter Hoenigschmid and Burkhard Rost - to be published Property changes on: trunk/packages/rostlab/librg-utils-perl/tags ___________________________________________________________________ Added: svn:ignore + build-area tarballs Modified: trunk/packages/rostlab/librg-utils-perl/trunk/debian/changelog =================================================================== --- trunk/packages/rostlab/librg-utils-perl/trunk/debian/changelog 2012-01-10 13:22:22 UTC (rev 9232) +++ trunk/packages/rostlab/librg-utils-perl/trunk/debian/changelog 2012-01-10 14:14:23 UTC (rev 9233) @@ -1,3 +1,9 @@ +librg-utils-perl (1.0.43-2) UNRELEASED; urgency=low + + * NOT RELEASED YET + + -- Laszlo Kajan <[email protected]> Mon, 28 Nov 2011 16:03:12 +0100 + librg-utils-perl (1.0.43-1) unstable; urgency=low * New upstream release Property changes on: trunk/packages/rostlab/reprof ___________________________________________________________________ Added: svn:ignore + build-area tarballs Property changes on: trunk/packages/rostlab/reprof/trunk/debian ___________________________________________________________________ Added: mergeWithUpstream + 1 Added: trunk/packages/rostlab/reprof/trunk/debian/changelog =================================================================== --- trunk/packages/rostlab/reprof/trunk/debian/changelog (rev 0) +++ trunk/packages/rostlab/reprof/trunk/debian/changelog 2012-01-10 14:14:23 UTC (rev 9233) @@ -0,0 +1,5 @@ +reprof (1.0.0-1) unstable; urgency=low + + * Initial release (Closes: #655336) + + -- Laszlo Kajan <[email protected]> Fri, 16 Dec 2011 16:44:22 +0100 Added: trunk/packages/rostlab/reprof/trunk/debian/compat =================================================================== --- trunk/packages/rostlab/reprof/trunk/debian/compat (rev 0) +++ trunk/packages/rostlab/reprof/trunk/debian/compat 2012-01-10 14:14:23 UTC (rev 9233) @@ -0,0 +1 @@ +7 Added: trunk/packages/rostlab/reprof/trunk/debian/control =================================================================== --- trunk/packages/rostlab/reprof/trunk/debian/control (rev 0) +++ trunk/packages/rostlab/reprof/trunk/debian/control 2012-01-10 14:14:23 UTC (rev 9233) @@ -0,0 +1,38 @@ +Source: reprof +Section: science +Priority: extra +Maintainer: Debian Med Packaging Team <[email protected]> +Uploaders: Peter Hoenigschmid <[email protected]>, Laszlo Kajan <[email protected]> +Build-Depends: debhelper (>= 7.0.50~), autotools-dev +Standards-Version: 3.9.2 +Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/rostlab/reprof/trunk/ +Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/reprof/trunk/ +DM-Upload-Allowed: yes +Homepage: http://rostlab.org/ + +Package: reprof +Architecture: all +Depends: ${perl:Depends}, ${misc:Depends}, librg-reprof-bundle-perl +Recommends: pp-popularity-contest +Description: protein secondary structure and accessibility predictor + 'reprof' is an improved implementation of 'prof', a popular protein secondary + structure and accessibility predictor. Prediction is either + done from protein sequence alone or from an alignment - the latter should be + used for optimal performance. + . + This package provides the 'reprof' command. It is only a command line + interface to the functionality provided by the modules in + librg-reprof-bundle-perl. + +Package: librg-reprof-bundle-perl +Section: perl +Architecture: all +Depends: ${perl:Depends}, ${misc:Depends}, libai-fann-perl +Description: protein secondary structure and accessibility predictor + 'reprof' is an improved implementation of 'prof', a popular protein secondary + structure and accessibility predictor. Prediction is either + done from protein sequence alone or from an alignment - the latter should be + used for optimal performance. + . + This package provides the perl modules implementing 'reprof' along with the + necessary data files. Added: trunk/packages/rostlab/reprof/trunk/debian/copyright =================================================================== --- trunk/packages/rostlab/reprof/trunk/debian/copyright (rev 0) +++ trunk/packages/rostlab/reprof/trunk/debian/copyright 2012-01-10 14:14:23 UTC (rev 9233) @@ -0,0 +1,42 @@ +This work was packaged for Debian by: + + Peter Hoenigschmid <[email protected]> on Fri, 16 Dec 2011 16:44:22 +0100 + +It was downloaded from: + + ftp://rostlab.org/reprof/ + +Upstream Authors: + + Peter Hoenigschmid <[email protected]> + Burkhard Rost + +Copyright: + + Copyright (C) 2011 Peter Hoenigschmid, Technical University of Munich, Germany + Copyright (C) 2011 Burkhard Rost, Technical University of Munich, Germany + +License: + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + +On Debian systems, the complete text of the GNU General +Public License version 3 can be found in `/usr/share/common-licenses/GPL-3'. + +The Debian packaging is: + + Copyright (C) 2011 Peter Hoenigschmid <[email protected]> + +and is licensed under the GPL version 3, +see "/usr/share/common-licenses/GPL-3". Added: trunk/packages/rostlab/reprof/trunk/debian/librg-reprof-bundle-perl.install =================================================================== --- trunk/packages/rostlab/reprof/trunk/debian/librg-reprof-bundle-perl.install (rev 0) +++ trunk/packages/rostlab/reprof/trunk/debian/librg-reprof-bundle-perl.install 2012-01-10 14:14:23 UTC (rev 9233) @@ -0,0 +1,2 @@ +usr/share/perl5 +usr/share/reprof Added: trunk/packages/rostlab/reprof/trunk/debian/reprof.install =================================================================== --- trunk/packages/rostlab/reprof/trunk/debian/reprof.install (rev 0) +++ trunk/packages/rostlab/reprof/trunk/debian/reprof.install 2012-01-10 14:14:23 UTC (rev 9233) @@ -0,0 +1,3 @@ +usr/bin/reprof +usr/share/man/man1/reprof.1 +usr/share/doc/reprof/examples Added: trunk/packages/rostlab/reprof/trunk/debian/rules =================================================================== --- trunk/packages/rostlab/reprof/trunk/debian/rules (rev 0) +++ trunk/packages/rostlab/reprof/trunk/debian/rules 2012-01-10 14:14:23 UTC (rev 9233) @@ -0,0 +1,16 @@ +#!/usr/bin/make -f +# -*- makefile -*- +# Sample debian/rules that uses debhelper. +# This file was originally written by Joey Hess and Craig Small. +# As a special exception, when this file is copied by dh-make into a +# dh-make output file, you may use that output file without restriction. +# This special exception was added by Craig Small in version 0.37 of dh-make. + +# Uncomment this to turn on verbose mode. +export DH_VERBOSE=1 + +%: + dh $@ + +override_dh_compress: + dh_compress -Xexample.Q Property changes on: trunk/packages/rostlab/reprof/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/rostlab/reprof/trunk/debian/source/format =================================================================== --- trunk/packages/rostlab/reprof/trunk/debian/source/format (rev 0) +++ trunk/packages/rostlab/reprof/trunk/debian/source/format 2012-01-10 14:14:23 UTC (rev 9233) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/rostlab/reprof/trunk/debian/watch =================================================================== --- trunk/packages/rostlab/reprof/trunk/debian/watch (rev 0) +++ trunk/packages/rostlab/reprof/trunk/debian/watch 2012-01-10 14:14:23 UTC (rev 9233) @@ -0,0 +1,5 @@ +# Compulsory line, this is a version 3 file +version=3 + +# Uncommment to examine a FTP server +ftp://rostlab.org/reprof/reprof-([0-9.]*)\.tar\.gz debian uupdate _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
