The following commit has been merged in the master branch:
commit 2e3e8e8d91595db8974d7311beba90fdd64ad320
Author: Charles Plessy <[email protected]>
Date:   Wed Jan 11 15:07:04 2012 +0900

    Removed the /usr/bin/groupBy wrapper, as groupBy is also distributed by the 
filo package.

diff --git a/debian/rules b/debian/rules
index 26b90ee..c3cf5ad 100755
--- a/debian/rules
+++ b/debian/rules
@@ -10,3 +10,6 @@ DEB_INSTALL_CHANGELOGS_ALL := RELEASE_HISTORY
 
 get-orig-source:
        uscan --no-symlink --force-download --download-version 
$(DEB_UPSTREAM_VERSION)
+
+binary-fixup/bedtools::
+       rm $(CURDIR)/debian/bedtools/usr/bin/groupBy # distributed in the filo 
package.

-- 
Suite of utilities for comparing genomic features.

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