Author: osallou-guest
Date: 2012-01-28 09:47:24 +0000 (Sat, 28 Jan 2012)
New Revision: 9473
Added:
trunk/packages/gmod/chado/trunk/debian/chado-utils.dirs
Modified:
trunk/packages/gmod/chado/trunk/debian/control
trunk/packages/gmod/chado/trunk/debian/libchado-perl.dirs
trunk/packages/gmod/chado/trunk/debian/rules
Log:
separate libs from bins
Added: trunk/packages/gmod/chado/trunk/debian/chado-utils.dirs
===================================================================
--- trunk/packages/gmod/chado/trunk/debian/chado-utils.dirs
(rev 0)
+++ trunk/packages/gmod/chado/trunk/debian/chado-utils.dirs 2012-01-28
09:47:24 UTC (rev 9473)
@@ -0,0 +1,2 @@
+usr/share/gmod/chado/bin
+usr/share/man/man1
Modified: trunk/packages/gmod/chado/trunk/debian/control
===================================================================
--- trunk/packages/gmod/chado/trunk/debian/control 2012-01-28 08:38:44 UTC
(rev 9472)
+++ trunk/packages/gmod/chado/trunk/debian/control 2012-01-28 09:47:24 UTC
(rev 9473)
@@ -16,7 +16,7 @@
Package: libchado-perl
Architecture: all
Depends: ${misc:Depends}, ${perl:Depends}, postgresql-client,
libbio-chado-schema-perl
-Recommends: xsltproc
+Recommends: xsltproc, chado-utils
Description: database schema and tools for genomic data
Chado is a relational database schema that underlies many GMOD
installations. It is capable of representing many of the general
@@ -27,3 +27,18 @@
of the most sophisticated relational schemas currently available in
molecular biology. The price of this capability is that the new user
must spend some time becoming familiar with its fundamentals.
+
+Package: chado-utils
+Architecture: all
+Depends: ${misc:Depends}, ${perl:Depends}, libchado-perl
+Recomments: xsltproc
+Description: tools to add/extract data from Chado
+ This package contains several tools that can be used to
+ extract data from Chado database or prepare data before upload.
+ It is a subset above the Chado database schema and libraries.
+ .
+ Chado is a relational database schema that underlies many GMOD
+ installations. It is capable of representing many of the general
+ classes of data frequently encountered in modern biology such as
+ sequence, sequence comparisons, phenotypes, genotypes, ontologies,
+ publications, and phylogeny.
Modified: trunk/packages/gmod/chado/trunk/debian/libchado-perl.dirs
===================================================================
--- trunk/packages/gmod/chado/trunk/debian/libchado-perl.dirs 2012-01-28
08:38:44 UTC (rev 9472)
+++ trunk/packages/gmod/chado/trunk/debian/libchado-perl.dirs 2012-01-28
09:47:24 UTC (rev 9473)
@@ -1,4 +1,5 @@
usr/share/gmod/chado/bin
+usr/share/man/man3
etc/gmod
usr/share/perl5
usr/share/gmod/chado/lib/Bio/Chado
Modified: trunk/packages/gmod/chado/trunk/debian/rules
===================================================================
--- trunk/packages/gmod/chado/trunk/debian/rules 2012-01-28 08:38:44 UTC
(rev 9472)
+++ trunk/packages/gmod/chado/trunk/debian/rules 2012-01-28 09:47:24 UTC
(rev 9473)
@@ -6,13 +6,6 @@
export CHADO_DB_NAME=gmod-chado
export PREFIX=/usr
-#$(CURDIR)/debian/libchado-perl/usr/share/gmod/chado/conf:
-# mkdir -p $(CURDIR)/debian/libchado-perl/usr/share/gmod/chado/conf
-# touch $(CURDIR)/debian/libchado-perl/usr/share/gmod/chado/conf/gmod.conf
-# touch
$(CURDIR)/debian/libchado-perl/usr/share/gmod/chado/conf/default.conf
-#
-#%: $(CURDIR)/debian/libchado-perl/usr/share/gmod/chado/conf
-
%:
dh $@ --buildsystem=perl_makemaker
@@ -33,10 +26,11 @@
find debian/libchado-perl/ -name .packlist | xargs rm -f
chmod 755
debian/libchado-perl/usr/share/gmod/chado/soi/t/t_soi_parse_intersect
chmod 755
debian/libchado-perl/usr/share/gmod/chado/src/chado/modules/audit/make_audit_ddl
- mv debian/libchado-perl/usr/bin/*
debian/libchado-perl/usr/share/gmod/chado/bin/
- mv debian/libchado-perl/usr/lib/perl5/*
debian/libchado-perl/usr/share/perl5/
+ mv debian/tmp/usr/bin/* debian/chado-utils/usr/share/gmod/chado/bin/
+ mv debian/tmp/usr/lib/perl5/* debian/libchado-perl/usr/share/perl5/
rm -rf debian/libchado-perl/usr/lib/perl5
- mv debian/libchado-perl/usr/man debian/libchado-perl/usr/share/
+ mv debian/tmp/usr/man/man3 debian/libchado-perl/usr/share/man3
+ mv debian/tmp/usr/man/man1 debian/chado-utils/usr/share/man1
cp debian/testdb.pl debian/libchado-perl/usr/share/gmod/chado/bin/
rm -rf
debian/libchado-perl/usr/share/perl5/x86_64-linux-gnu-thread-multi
# Needed for runtime configure
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