Author: plessy Date: 2012-02-11 13:35:04 +0000 (Sat, 11 Feb 2012) New Revision: 9648
Added: trunk/packages/ssake/tags/3.8-2/ trunk/packages/ssake/tags/3.8-2/debian/changelog trunk/packages/ssake/tags/3.8-2/debian/copyright trunk/packages/ssake/tags/3.8-2/debian/ssake.docs trunk/packages/ssake/tags/3.8-2/debian/upstream Removed: trunk/packages/ssake/tags/3.8-2/debian/changelog trunk/packages/ssake/tags/3.8-2/debian/copyright trunk/packages/ssake/tags/3.8-2/debian/reference trunk/packages/ssake/tags/3.8-2/debian/ssake.docs Log: [svn-buildpackage] Tagging ssake 3.8-2 Deleted: trunk/packages/ssake/tags/3.8-2/debian/changelog =================================================================== --- trunk/packages/ssake/trunk/debian/changelog 2012-02-10 22:53:56 UTC (rev 9643) +++ trunk/packages/ssake/tags/3.8-2/debian/changelog 2012-02-11 13:35:04 UTC (rev 9648) @@ -1,81 +0,0 @@ -ssake (3.8-2) UNRELEASED; urgency=low - - [ A. Costa ] - * Corrected a typo in debian/ssake.1 (Closes: #650469). - - [ Charles Plessy ] - * Depend on libperl4-corelibs-perl | perl (<< 5.12.3-7). - See Lintian's script-uses-perl4-libs-without-dep tag. - - -- Charles Plessy <[email protected]> Wed, 30 Nov 2011 23:19:21 +0900 - -ssake (3.8-1) unstable; urgency=low - - * New upstream version 30% faster than the previous release. Additional - assembly control has been implemented (-w) that limits the generation of - low depth of coverage contigs. - * Use Debhelper 8 (debian/control, debian/compat). - * Corrected VCS URLs (debian/control). - * Incremented Standards-Version to indicate conformance with Policy 3.9.2. - (debian/control, changes needed.) - * Implement rudimentary regression tests (debian/rules). - - -- Charles Plessy <[email protected]> Mon, 15 Aug 2011 14:10:18 +0900 - -ssake (3.7-1) unstable; urgency=low - - * New upstream version - * Standards-Version: 3.9.1 (no changes needed) - * debian/rules: reflect upstream renamed testdir - - -- Andreas Tille <[email protected]> Thu, 25 Nov 2010 15:18:09 +0100 - -ssake (3.5-1) unstable; urgency=low - - * New upstream version - * debian/source/format: Switched to source format 3.0 (quilt) - * debian/control: - - Standards-Version: 3.8.4 (no changes needed) - * debian/rules - - fixed cut-n-pasto - - -- Andreas Tille <[email protected]> Thu, 24 Jun 2010 14:06:08 +0200 - -ssake (3.4-1) unstable; urgency=low - - * New upstream release. - - Fixed a bug in PET routine. User can now track read position and - individual base coverage for reads *fully embedded* within contigs, - using the -c option. - - Version 3.4 exploits paired-end reads to explore possible contig merges - within scaffolds (Consecutive contigs >= -z bases must overlap by -m - bases or more). - * debian/control: - - Incremented Standards-Version to indicate conformance with Policy 3.8.2. - (No changes needed.) - - Using the Unicode ‘prime’ character for the 3′ direction (cosmetic). - * Simplified debian/copyright according to latest discussions about the - machine-readable format. - - -- Charles Plessy <[email protected]> Tue, 23 Jun 2009 13:58:49 +0900 - -ssake (3.2.1-2) unstable; urgency=low - - * debian/control: - - ssake and ssake-exmamples now depend on ${misc:Depends}. - - ssake-examples suggests ssake instead of depending. - - Reduced redundancy in the description of ssake. - - Gave a specific description to ssake-examples. - * debian/ssake.docs, debian/reference: added BibTeX-formatted reference. - * debian/copyright: - - Corrected the identity of the upstream maintainer. - - Points to the version 2 of the GNU GPL. - - added myself to the Hall of Fame. - - -- Charles Plessy <[email protected]> Sat, 07 Mar 2009 13:42:47 +0900 - -ssake (3.2.1-1) unstable; urgency=low - - * Initial release (Closes: #506752) - - -- Andreas Tille <[email protected]> Mon, 24 Nov 2008 13:12:38 +0100 Copied: trunk/packages/ssake/tags/3.8-2/debian/changelog (from rev 9647, trunk/packages/ssake/trunk/debian/changelog) =================================================================== --- trunk/packages/ssake/tags/3.8-2/debian/changelog (rev 0) +++ trunk/packages/ssake/tags/3.8-2/debian/changelog 2012-02-11 13:35:04 UTC (rev 9648) @@ -0,0 +1,81 @@ +ssake (3.8-2) unstable; urgency=low + + [ A. Costa ] + * Corrected a typo in debian/ssake.1 (Closes: #650469). + + [ Charles Plessy ] + * Depend on libperl4-corelibs-perl | perl (<< 5.12.3-7). + Closes: #659428. + + -- Charles Plessy <[email protected]> Sat, 11 Feb 2012 22:13:43 +0900 + +ssake (3.8-1) unstable; urgency=low + + * New upstream version 30% faster than the previous release. Additional + assembly control has been implemented (-w) that limits the generation of + low depth of coverage contigs. + * Use Debhelper 8 (debian/control, debian/compat). + * Corrected VCS URLs (debian/control). + * Incremented Standards-Version to indicate conformance with Policy 3.9.2. + (debian/control, changes needed.) + * Implement rudimentary regression tests (debian/rules). + + -- Charles Plessy <[email protected]> Mon, 15 Aug 2011 14:10:18 +0900 + +ssake (3.7-1) unstable; urgency=low + + * New upstream version + * Standards-Version: 3.9.1 (no changes needed) + * debian/rules: reflect upstream renamed testdir + + -- Andreas Tille <[email protected]> Thu, 25 Nov 2010 15:18:09 +0100 + +ssake (3.5-1) unstable; urgency=low + + * New upstream version + * debian/source/format: Switched to source format 3.0 (quilt) + * debian/control: + - Standards-Version: 3.8.4 (no changes needed) + * debian/rules + - fixed cut-n-pasto + + -- Andreas Tille <[email protected]> Thu, 24 Jun 2010 14:06:08 +0200 + +ssake (3.4-1) unstable; urgency=low + + * New upstream release. + - Fixed a bug in PET routine. User can now track read position and + individual base coverage for reads *fully embedded* within contigs, + using the -c option. + - Version 3.4 exploits paired-end reads to explore possible contig merges + within scaffolds (Consecutive contigs >= -z bases must overlap by -m + bases or more). + * debian/control: + - Incremented Standards-Version to indicate conformance with Policy 3.8.2. + (No changes needed.) + - Using the Unicode ‘prime’ character for the 3′ direction (cosmetic). + * Simplified debian/copyright according to latest discussions about the + machine-readable format. + + -- Charles Plessy <[email protected]> Tue, 23 Jun 2009 13:58:49 +0900 + +ssake (3.2.1-2) unstable; urgency=low + + * debian/control: + - ssake and ssake-exmamples now depend on ${misc:Depends}. + - ssake-examples suggests ssake instead of depending. + - Reduced redundancy in the description of ssake. + - Gave a specific description to ssake-examples. + * debian/ssake.docs, debian/reference: added BibTeX-formatted reference. + * debian/copyright: + - Corrected the identity of the upstream maintainer. + - Points to the version 2 of the GNU GPL. + - added myself to the Hall of Fame. + + -- Charles Plessy <[email protected]> Sat, 07 Mar 2009 13:42:47 +0900 + +ssake (3.2.1-1) unstable; urgency=low + + * Initial release (Closes: #506752) + + -- Andreas Tille <[email protected]> Mon, 24 Nov 2008 13:12:38 +0100 Deleted: trunk/packages/ssake/tags/3.8-2/debian/copyright =================================================================== --- trunk/packages/ssake/trunk/debian/copyright 2012-02-10 22:53:56 UTC (rev 9643) +++ trunk/packages/ssake/tags/3.8-2/debian/copyright 2012-02-11 13:35:04 UTC (rev 9648) @@ -1,28 +0,0 @@ -Format: http://dep.debian.net/deps/dep5/ -Source: http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.8/ssake_v3-8-tar.gz - -Files: * -Copyright: © 2006-2011 Canada's Michael Smith Genome Science Centre - © 2006–2011 Rene Warren <[email protected]> -License: GPL-2+ - This program is free software: you can redistribute it and/or modify - it under the terms of the GNU General Public License as published by - the Free Software Foundation, either version 2 of the License, or - (at your option) any later version. - . - This program is distributed in the hope that it will be useful, - but WITHOUT ANY WARRANTY; without even the implied warranty of - MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - GNU General Public License for more details. - . - You should have received a copy of the GNU General Public License - along with this program. If not, see <http://www.gnu.org/licenses/>. -Comment: On Debian systems, the complete text of the GNU Public License version 2 - can be found in ‘/usr/share/common-licenses/GPL-2’. - -Files: debian/* -Copyright: © 2008 Andreas Tille <[email protected]> - © 2009 Charles Plessy <[email protected]> -License: Same-as-SSAKE-itelf - (see above) - Copied: trunk/packages/ssake/tags/3.8-2/debian/copyright (from rev 9644, trunk/packages/ssake/trunk/debian/copyright) =================================================================== --- trunk/packages/ssake/tags/3.8-2/debian/copyright (rev 0) +++ trunk/packages/ssake/tags/3.8-2/debian/copyright 2012-02-11 13:35:04 UTC (rev 9648) @@ -0,0 +1,28 @@ +Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ +Source: http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/3.8/ssake_v3-8-tar.gz + +Files: * +Copyright: © 2006-2011 Canada's Michael Smith Genome Science Centre + © 2006–2011 Rene Warren <[email protected]> +License: GPL-2+ + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 2 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. +Comment: On Debian systems, the complete text of the GNU General Public + License version 2 can be found in ‘/usr/share/common-licenses/GPL-2’. + +Files: debian/* +Copyright: © 2008 Andreas Tille <[email protected]> + © 2009 Charles Plessy <[email protected]> +License: Same-as-SSAKE-itelf + (see above) + Deleted: trunk/packages/ssake/tags/3.8-2/debian/reference =================================================================== --- trunk/packages/ssake/trunk/debian/reference 2012-02-10 22:53:56 UTC (rev 9643) +++ trunk/packages/ssake/tags/3.8-2/debian/reference 2012-02-11 13:35:04 UTC (rev 9648) @@ -1,13 +0,0 @@ -@article{ReneL. Warren02152007, -author = {Warren, Rene L. and Sutton, Granger G. and Jones, Steven J. M. and Holt, Robert A.}, -title = {{Assembling millions of short DNA sequences using SSAKE}}, -journal = {Bioinformatics}, -volume = {23}, -number = {4}, -pages = {500-501}, -doi = {10.1093/bioinformatics/btl629}, -year = {2007}, -URL = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/4/500}, -eprint = {http://bioinformatics.oxfordjournals.org/cgi/reprint/23/4/500.pdf} -} - Deleted: trunk/packages/ssake/tags/3.8-2/debian/ssake.docs =================================================================== --- trunk/packages/ssake/trunk/debian/ssake.docs 2012-02-10 22:53:56 UTC (rev 9643) +++ trunk/packages/ssake/tags/3.8-2/debian/ssake.docs 2012-02-11 13:35:04 UTC (rev 9648) @@ -1,3 +0,0 @@ -SSAKE.readme -tools/TQS.readme -debian/reference Copied: trunk/packages/ssake/tags/3.8-2/debian/ssake.docs (from rev 9646, trunk/packages/ssake/trunk/debian/ssake.docs) =================================================================== --- trunk/packages/ssake/tags/3.8-2/debian/ssake.docs (rev 0) +++ trunk/packages/ssake/tags/3.8-2/debian/ssake.docs 2012-02-11 13:35:04 UTC (rev 9648) @@ -0,0 +1,2 @@ +SSAKE.readme +tools/TQS.readme Copied: trunk/packages/ssake/tags/3.8-2/debian/upstream (from rev 9645, trunk/packages/ssake/trunk/debian/upstream) =================================================================== --- trunk/packages/ssake/tags/3.8-2/debian/upstream (rev 0) +++ trunk/packages/ssake/tags/3.8-2/debian/upstream 2012-02-11 13:35:04 UTC (rev 9648) @@ -0,0 +1,19 @@ +Homepage: http://www.bcgsc.ca/platform/bioinfo/software/ssake +Name: SSAKE +Reference: + author: Warren, Rene L. and Sutton, Granger G. and Jones, Steven J. M. and Holt, Robert A. + title: Assembling millions of short DNA sequences using SSAKE + journal: Bioinformatics + volume: 23 + number: 4 + pages: 500-501 + doi: 10.1093/bioinformatics/btl629 + PMID: 17158514 + year: 2007 + URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/4/500 + eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/23/4/500.pdf +Watch: | + version=3 + + opts="uversionmangle=s/-/\./g" \ + http://www.bcgsc.ca/platform/bioinfo/software/ssake/releases/([\d.]*)/ssake_v([-\d]*)-tar.gz _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
