Author: lkajan-guest
Date: 2012-02-15 13:19:10 +0000 (Wed, 15 Feb 2012)
New Revision: 9665
Added:
trunk/packages/rostlab/libzerg/branches/
trunk/packages/rostlab/proftmb/
trunk/packages/rostlab/proftmb/tags/
trunk/packages/rostlab/proftmb/trunk/
trunk/packages/rostlab/proftmb/trunk/debian/
trunk/packages/rostlab/proftmb/trunk/debian/changelog
trunk/packages/rostlab/proftmb/trunk/debian/compat
trunk/packages/rostlab/proftmb/trunk/debian/control
trunk/packages/rostlab/proftmb/trunk/debian/copyright
trunk/packages/rostlab/proftmb/trunk/debian/rules
trunk/packages/rostlab/proftmb/trunk/debian/source/
trunk/packages/rostlab/proftmb/trunk/debian/source/format
trunk/packages/rostlab/proftmb/trunk/debian/upstream
trunk/packages/rostlab/proftmb/trunk/debian/watch
Modified:
trunk/packages/rostlab/libai-fann-perl/trunk/debian/control
trunk/packages/rostlab/profphd/trunk/debian/upstream
trunk/packages/rostlab/reprof/tags/
trunk/packages/rostlab/reprof/trunk/debian/changelog
trunk/packages/rostlab/reprof/trunk/debian/rules
Log:
proftmb Debianization
Modified: trunk/packages/rostlab/libai-fann-perl/trunk/debian/control
===================================================================
--- trunk/packages/rostlab/libai-fann-perl/trunk/debian/control 2012-02-15
12:46:27 UTC (rev 9664)
+++ trunk/packages/rostlab/libai-fann-perl/trunk/debian/control 2012-02-15
13:19:10 UTC (rev 9665)
@@ -14,7 +14,7 @@
Section: perl
Priority: optional
Architecture: any
-Depends: ${perl:Depends}, ${shlibs:Depends}
+Depends: ${perl:Depends}, ${shlibs:Depends}, ${misc:Depends}
Description: Perl wrapper for the FANN library
This module provides a Perl wrapper for the FANN library
(http://leenissen.dk/fann/wp/).
Modified: trunk/packages/rostlab/profphd/trunk/debian/upstream
===================================================================
--- trunk/packages/rostlab/profphd/trunk/debian/upstream 2012-02-15
12:46:27 UTC (rev 9664)
+++ trunk/packages/rostlab/profphd/trunk/debian/upstream 2012-02-15
13:19:10 UTC (rev 9665)
@@ -7,7 +7,7 @@
Number: 1
Pages: 55-72
Year: 1994
- URL: http://rostlab.org/
+ URL: http://www.ncbi.nlm.nih.gov/pubmed/8066087
PMID: 8066087
- Author: Rost, B. and Sander, C.
Title: 'Conservation and prediction of solvent accessibility in protein
families.'
@@ -16,7 +16,7 @@
Number: 3
Pages: 216-26
Year: 1994
- URL: http://rostlab.org/
+ URL: http://www.ncbi.nlm.nih.gov/pubmed/7892171
PMID: 7892171
- Author: Rost, B., Casadio, R., Fariselli, P., and Sander, C.
Title: 'Transmembrane helices predicted at 95% accuracy.'
@@ -25,5 +25,5 @@
Number: 3
Pages: 521-33
Year: 1995
- URL: http://rostlab.org/
+ URL: http://www.ncbi.nlm.nih.gov/pubmed/7795533
PMID: 7795533
Property changes on: trunk/packages/rostlab/proftmb
___________________________________________________________________
Added: svn:ignore
+ tarballs
build-area
Property changes on: trunk/packages/rostlab/proftmb/trunk/debian
___________________________________________________________________
Added: mergeWithUpstream
+ 1
Added: trunk/packages/rostlab/proftmb/trunk/debian/changelog
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/changelog
(rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/changelog 2012-02-15
13:19:10 UTC (rev 9665)
@@ -0,0 +1,5 @@
+proftmb (1.1.8-1) UNRELEASED; urgency=low
+
+ * Initial release (Closes: #659964)
+
+ -- Laszlo Kajan <[email protected]> Wed, 15 Feb 2012 12:46:59 +0100
Added: trunk/packages/rostlab/proftmb/trunk/debian/compat
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/compat
(rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/compat 2012-02-15 13:19:10 UTC
(rev 9665)
@@ -0,0 +1 @@
+8
Added: trunk/packages/rostlab/proftmb/trunk/debian/control
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/control
(rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/control 2012-02-15 13:19:10 UTC
(rev 9665)
@@ -0,0 +1,19 @@
+Source: proftmb
+Section: science
+Priority: extra
+Maintainer: Debian Med Packaging Team
<[email protected]>
+Uploaders: Laszlo Kajan <[email protected]>
+DM-Upload-Allowed: yes
+Build-Depends: debhelper (>= 8.0.0), autotools-dev, help2man, opt
+Standards-Version: 3.9.2
+Homepage: http://rostlab.org/
+Vcs-Svn: svn://svn.debian.org/debian-med/trunk/packages/rostlab/proftmb/trunk/
+Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/proftmb/trunk/
+
+Package: proftmb
+Architecture: any
+Depends: ${shlibs:Depends}, ${misc:Depends}
+Recommends: pp-popularity-contest
+Description: per-residue prediction of bacterial transmembrane beta barrels
+ proftmb provides a four state (up-strand, down-strand, periplasmic loop, and
+ outer loop) per-residue prediction for the protein.
Added: trunk/packages/rostlab/proftmb/trunk/debian/copyright
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/copyright
(rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/copyright 2012-02-15
13:19:10 UTC (rev 9665)
@@ -0,0 +1,24 @@
+Format: http://dep.debian.net/deps/dep5
+Upstream-Name: proftmb
+Source: ftp://rostlab.org/proftmb/proftmb-([0-9.]+)\.tar\.gz
+
+Files: *
+Copyright: 2004 Henry Bigelow <[email protected]>, Columbia University in
the City of New York, USA
+License: GPL-3.0+
+
+License: GPL-3.0+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
Added: trunk/packages/rostlab/proftmb/trunk/debian/rules
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/rules
(rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/rules 2012-02-15 13:19:10 UTC
(rev 9665)
@@ -0,0 +1,7 @@
+#!/usr/bin/make -f
+
+# Uncomment this to turn on verbose mode.
+export DH_VERBOSE=1
+
+%:
+ dh $@ --parallel
Property changes on: trunk/packages/rostlab/proftmb/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/rostlab/proftmb/trunk/debian/source/format
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/source/format
(rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/source/format 2012-02-15
13:19:10 UTC (rev 9665)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/rostlab/proftmb/trunk/debian/upstream
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/upstream
(rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/upstream 2012-02-15
13:19:10 UTC (rev 9665)
@@ -0,0 +1,12 @@
+Name: proftmb
+Contact: Henry Bigelow <[email protected]>
+Homepage: http://rostlab.org/
+Reference:
+ - Author: Bigelow, H. and Rost, B.
+ Title: 'PROFtmb: a web server for predicting bacterial transmembrane beta
barrel proteins.'
+ Journal: Nucleic Acids Res
+ Volume: 34(Web Server issue)
+ Pages: W186-8
+ year: 2006
+ URL: http://www.ncbi.nlm.nih.gov/pubmed/16844988
+ PMID: 16844988
Added: trunk/packages/rostlab/proftmb/trunk/debian/watch
===================================================================
--- trunk/packages/rostlab/proftmb/trunk/debian/watch
(rev 0)
+++ trunk/packages/rostlab/proftmb/trunk/debian/watch 2012-02-15 13:19:10 UTC
(rev 9665)
@@ -0,0 +1,3 @@
+version=3
+
+ftp://rostlab.org/proftmb/proftmb-([0-9.]+)\.tar\.gz debian uupdate
Property changes on: trunk/packages/rostlab/reprof/tags
___________________________________________________________________
Added: svn:ignore
+ build-area
tarballs
Modified: trunk/packages/rostlab/reprof/trunk/debian/changelog
===================================================================
--- trunk/packages/rostlab/reprof/trunk/debian/changelog 2012-02-15
12:46:27 UTC (rev 9664)
+++ trunk/packages/rostlab/reprof/trunk/debian/changelog 2012-02-15
13:19:10 UTC (rev 9665)
@@ -1,3 +1,9 @@
+reprof (1.0.1-2) UNRELEASED; urgency=low
+
+ * NOT RELEASED YET
+
+ -- Laszlo Kajan <[email protected]> Fri, 13 Jan 2012 19:00:16 +0100
+
reprof (1.0.1-1) unstable; urgency=low
* New upstream release
Modified: trunk/packages/rostlab/reprof/trunk/debian/rules
===================================================================
--- trunk/packages/rostlab/reprof/trunk/debian/rules 2012-02-15 12:46:27 UTC
(rev 9664)
+++ trunk/packages/rostlab/reprof/trunk/debian/rules 2012-02-15 13:19:10 UTC
(rev 9665)
@@ -7,5 +7,6 @@
%:
dh $@
+.PHONY: override_dh_compress
override_dh_compress:
dh_compress -Xexample.Q
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