Author: osallou-guest Date: 2012-02-19 15:37:17 +0000 (Sun, 19 Feb 2012) New Revision: 9713
Modified: trunk/packages/gmod/gbrowse/trunk/debian/changelog trunk/packages/gmod/gbrowse/trunk/debian/control trunk/packages/gmod/gbrowse/trunk/debian/patches/debian-packaging-patch trunk/packages/gmod/gbrowse/trunk/debian/patches/gbrowse-slave-fix_defaults_path Log: update with new upstream release Modified: trunk/packages/gmod/gbrowse/trunk/debian/changelog =================================================================== --- trunk/packages/gmod/gbrowse/trunk/debian/changelog 2012-02-19 14:33:10 UTC (rev 9712) +++ trunk/packages/gmod/gbrowse/trunk/debian/changelog 2012-02-19 15:37:17 UTC (rev 9713) @@ -1,3 +1,11 @@ +gbrowse (2.47-1) UNRELEASED; urgency=low + + * new upstream release + * debian/control: add libbiographics-perl dependency + * Waiting for libbiographics-perl package upgrade to 2.26 + + -- Olivier Sallou <[email protected]> Sun, 19 Feb 2012 15:59:53 +0100 + gbrowse (2.42~dfsg-1) unstable; urgency=low * New upstream release Modified: trunk/packages/gmod/gbrowse/trunk/debian/control =================================================================== --- trunk/packages/gmod/gbrowse/trunk/debian/control 2012-02-19 14:33:10 UTC (rev 9712) +++ trunk/packages/gmod/gbrowse/trunk/debian/control 2012-02-19 15:37:17 UTC (rev 9713) @@ -3,7 +3,7 @@ Priority: optional Build-Depends: bioperl (>= 1.6.901), debhelper (>= 8), libbio-graphics-perl (>= 2.09), libcapture-tiny-perl, - libcgi-session-perl (>= 4.02), + libcgi-session-perl (>= 4.02), libbio-graphics-perl (>= 2.26), libgd-gd2-perl (>= 2.07) | libgd-gd2-noxpm-perl (>= 2.07), libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl, perl (>= 5.10.0) | libextutils-cbuilder-perl, sqlite3,libdbd-sqlite3-perl, libterm-readkey-perl, libjs-prototype (>=1.7), libjs-scriptaculous (>= 1.9) @@ -20,7 +20,7 @@ Architecture: all Depends: ${misc:Depends}, ${perl:Depends}, bioperl (>= 1.6.901), libbio-graphics-perl (>= 2.09), - libcgi-session-perl (>= 4.02), + libcgi-session-perl (>= 4.02), libbio-graphics-perl (>= 2.26), libgd-gd2-noxpm-perl (>= 2.07) | libgd-gd2-perl (>= 2.07), libio-string-perl, libjson-perl, libstatistics-descriptive-perl, libwww-perl, libhttp-daemon-perl, perl, perl (>= 5.10.0) | libextutils-cbuilder-perl, libterm-readkey-perl, sqlite3, libdbd-sqlite3-perl, libjs-prototype (>=1.7), libjs-scriptaculous (>=1.9) Modified: trunk/packages/gmod/gbrowse/trunk/debian/patches/debian-packaging-patch =================================================================== --- trunk/packages/gmod/gbrowse/trunk/debian/patches/debian-packaging-patch 2012-02-19 14:33:10 UTC (rev 9712) +++ trunk/packages/gmod/gbrowse/trunk/debian/patches/debian-packaging-patch 2012-02-19 15:37:17 UTC (rev 9713) @@ -91,7 +91,7 @@ </ul> <p> -@@ -56,12 +56,11 @@ +@@ -56,13 +56,13 @@ <li><a href="/gb2/gbrowse/yeast">http://your.host/gb2/gbrowse/yeast</a></li> <li><a href="/gb2/gbrowse/yeast_advanced">http://your.host/gb2/gbrowse/yeast_advanced</a></li> <li><a href="/gb2/gbrowse/yeast_renderfarm">http://your.host/gb2/gbrowse/yeast_renderfarm</a></li> @@ -99,13 +99,15 @@ </ul> <h3>Accelerated Demos</h3> -- + -If you have FastCGI and/or ModPerl installed, you will have access to +-an accelerated version of gbrowse at these URLs: +By default, FastCGI and ModPerl are not set by gbrowse installation, +However, if you have FastCGI and/or ModPerl installed, you will have access to - accelerated versions of gbrowse a these URLs: ++ accelerated versions of gbrowse a these URLs: <ul> + <li>FastCGI --- a/install_util/GBrowseInstall.pm +++ b/install_util/GBrowseInstall.pm @@ -32,6 +32,7 @@ @@ -116,7 +118,7 @@ ); my %OK_PROPS = @OK_PROPS; -@@ -419,6 +420,83 @@ +@@ -421,6 +422,83 @@ END } @@ -200,7 +202,7 @@ sub ACTION_install { my $self = shift; my $prefix = $self->install_base || $self->prefix || ''; -@@ -748,8 +826,9 @@ +@@ -750,8 +828,9 @@ sub guess_user_account_db { my $self = shift; if (eval "require DBD::SQLite; 1") { Modified: trunk/packages/gmod/gbrowse/trunk/debian/patches/gbrowse-slave-fix_defaults_path =================================================================== --- trunk/packages/gmod/gbrowse/trunk/debian/patches/gbrowse-slave-fix_defaults_path 2012-02-19 14:33:10 UTC (rev 9712) +++ trunk/packages/gmod/gbrowse/trunk/debian/patches/gbrowse-slave-fix_defaults_path 2012-02-19 15:37:17 UTC (rev 9713) @@ -1,10 +1,10 @@ Subject: fix default path on debian Author: Olivier Sallou <[email protected]> -Description: update path to be debian compliant -Last-Updated: 18/10/2011 +Description: update path to be debian compliant, add description +Last-Updated: 19/02/2012 --- a/etc/init.d/gbrowse-slave +++ b/etc/init.d/gbrowse-slave -@@ -1,6 +1,6 @@ +@@ -1,11 +1,12 @@ #!/bin/sh ### BEGIN INIT INFO -# Provides: gbrowse_slave @@ -12,7 +12,13 @@ # Required-Start: $remote_fs $syslog # Required-Stop: $remote_fs $syslog # Default-Start: 2 3 4 5 -@@ -24,8 +24,8 @@ + # Default-Stop: 0 1 6 + # Short-Description: Start/Stop the gbrowse_slave rendering server. ++# Description: Enable the GBrowse slave rendering mode + ### END INIT INFO + + PATH=/usr/local/sbin:/usr/local/bin:/sbin:/bin:/usr/sbin:/usr/bin +@@ -24,8 +25,8 @@ VERBOSITY=1 NICE=0 _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
