Author: lkajan-guest Date: 2012-03-29 16:03:51 +0000 (Thu, 29 Mar 2012) New Revision: 10161
Added: trunk/packages/rostlab/librg-blast-parser-perl/ trunk/packages/rostlab/librg-blast-parser-perl/branches/ trunk/packages/rostlab/librg-blast-parser-perl/tags/ trunk/packages/rostlab/librg-blast-parser-perl/trunk/ trunk/packages/rostlab/librostlab-blast/ trunk/packages/rostlab/librostlab-blast/branches/ trunk/packages/rostlab/librostlab-blast/tags/ trunk/packages/rostlab/librostlab-blast/trunk/ trunk/packages/rostlab/librostlab/ trunk/packages/rostlab/librostlab/branches/ trunk/packages/rostlab/librostlab/tags/ trunk/packages/rostlab/librostlab/trunk/ trunk/packages/rostlab/librostlab/trunk/debian/ trunk/packages/rostlab/librostlab/trunk/debian/changelog trunk/packages/rostlab/librostlab/trunk/debian/compat trunk/packages/rostlab/librostlab/trunk/debian/control trunk/packages/rostlab/librostlab/trunk/debian/copyright trunk/packages/rostlab/librostlab/trunk/debian/librostlab-doc.docs trunk/packages/rostlab/librostlab/trunk/debian/librostlab3-dev.install trunk/packages/rostlab/librostlab/trunk/debian/librostlab3.install trunk/packages/rostlab/librostlab/trunk/debian/rules trunk/packages/rostlab/librostlab/trunk/debian/source/ trunk/packages/rostlab/librostlab/trunk/debian/source/format trunk/packages/rostlab/librostlab/trunk/debian/watch Modified: trunk/packages/rostlab/libai-fann-perl/trunk/debian/compat trunk/packages/rostlab/libai-fann-perl/trunk/debian/control trunk/packages/rostlab/libai-fann-perl/trunk/debian/rules trunk/packages/rostlab/libzerg-perl/tags/ trunk/packages/rostlab/proftmb/tags/ Log: new directories for projects librostlab librostlab-blast librg-blast-parser-perl Modified: trunk/packages/rostlab/libai-fann-perl/trunk/debian/compat =================================================================== --- trunk/packages/rostlab/libai-fann-perl/trunk/debian/compat 2012-03-29 13:51:27 UTC (rev 10160) +++ trunk/packages/rostlab/libai-fann-perl/trunk/debian/compat 2012-03-29 16:03:51 UTC (rev 10161) @@ -1 +1 @@ -8 +7 Modified: trunk/packages/rostlab/libai-fann-perl/trunk/debian/control =================================================================== --- trunk/packages/rostlab/libai-fann-perl/trunk/debian/control 2012-03-29 13:51:27 UTC (rev 10160) +++ trunk/packages/rostlab/libai-fann-perl/trunk/debian/control 2012-03-29 16:03:51 UTC (rev 10161) @@ -4,7 +4,7 @@ Maintainer: Debian Med Packaging Team <[email protected]> Uploaders: Laszlo Kajan <[email protected]> DM-Upload-Allowed: yes -Build-Depends: cdbs, debhelper (>= 8), libfann-dev (>= 2.1.0~beta~) +Build-Depends: debhelper (>= 7), libfann-dev (>= 2.1.0~beta~) Standards-Version: 3.9.2 Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/rostlab/libai-fann-perl/trunk/?rev=0&sc=0 Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/rostlab/libai-fann-perl/trunk/ Modified: trunk/packages/rostlab/libai-fann-perl/trunk/debian/rules =================================================================== --- trunk/packages/rostlab/libai-fann-perl/trunk/debian/rules 2012-03-29 13:51:27 UTC (rev 10160) +++ trunk/packages/rostlab/libai-fann-perl/trunk/debian/rules 2012-03-29 16:03:51 UTC (rev 10161) @@ -1,7 +1,7 @@ #!/usr/bin/make -f -include /usr/share/cdbs/1/rules/debhelper.mk -include /usr/share/cdbs/1/class/perl-makemaker.mk +# In order to make dh verbose set this to 1: +export DH_VERBOSE=1 - -# Add here any variable or target overrides you need. +%: + dh --parallel $@ Property changes on: trunk/packages/rostlab/librostlab ___________________________________________________________________ Added: svn:ignore + build-area tarballs Property changes on: trunk/packages/rostlab/librostlab/trunk/debian ___________________________________________________________________ Added: mergeWithUpstream + 1 Added: trunk/packages/rostlab/librostlab/trunk/debian/changelog =================================================================== --- trunk/packages/rostlab/librostlab/trunk/debian/changelog (rev 0) +++ trunk/packages/rostlab/librostlab/trunk/debian/changelog 2012-03-29 16:03:51 UTC (rev 10161) @@ -0,0 +1,140 @@ +librostlab (1.0.20-1) UNRELEASED; urgency=low + + * Moved blast parser out into librostlab-blast. + + -- Laszlo Kajan <[email protected]> Wed, 28 Mar 2012 16:53:34 +0200 + +librostlab (1.0.19) unstable; urgency=low + + * Added trace_scanning() and changed trace_scanning( bool ) + * Fixed multi-result file parsing + + -- Laszlo Kajan <[email protected]> Wed, 21 Mar 2012 14:47:50 +0100 + +librostlab (1.0.18) unstable; urgency=low + + * Fixed more std::. + + -- Laszlo Kajan <[email protected]> Wed, 21 Mar 2012 14:41:19 +0100 + +librostlab (1.0.17) unstable; urgency=low + + * No using namespace std; any more in headers + + -- Laszlo Kajan <[email protected]> Wed, 21 Mar 2012 13:50:03 +0100 + +librostlab (1.0.16) unstable; urgency=low + + * changed library license to LGPL + * Changed package name to librostlab0, librostlab0-dbg and librostlab0-dev. + * Provides librostlab-dev. + * Hit is now a template with hsp type as parameter. + * Added NCBI BLOSUM62 matrix data. + * Cleaned up grammar for rounds. + * Added rostlab_stdio.h + + -- Laszlo Kajan <[email protected]> Fri, 14 Oct 2011 20:41:57 +0200 + +librostlab (1.0.15) unstable; urgency=low + + * better description + + -- Laszlo Kajan <[email protected]> Fri, 14 Oct 2011 20:34:30 +0200 + +librostlab (1.0.14) unstable; urgency=low + + * added documentation + + -- Laszlo Kajan <[email protected]> Fri, 14 Oct 2011 20:12:30 +0200 + +librostlab (1.0.13) unstable; urgency=low + + * parser::parse now returns result_type + * cast of result_type to bool is done + + -- Laszlo Kajan <[email protected]> Fri, 14 Oct 2011 19:34:04 +0200 + +librostlab (1.0.12) unstable; urgency=low + + * more headers installed + + -- Laszlo Kajan <[email protected]> Fri, 14 Oct 2011 19:18:42 +0200 + +librostlab (1.0.11) unstable; urgency=low + + * headers are now installed + + -- Laszlo Kajan <[email protected]> Fri, 14 Oct 2011 19:02:15 +0200 + +librostlab (1.0.10) unstable; urgency=low + + * Removed libzerg-based blast parser + * Added bison/flex based LGPL blast parser + + -- Laszlo Kajan <[email protected]> Thu, 06 Oct 2011 19:57:29 +0200 + +librostlab (1.0.9) unstable; urgency=low + + * flock_resource -> file_lock_resource + * locking now with fcntl: also works on NFS + + -- Laszlo Kajan <[email protected]> Mon, 26 Sep 2011 18:50:22 +0200 + +librostlab (1.0.8) unstable; urgency=low + + * added missing -dev dependency on librostlab0 + * removed private members from doxygen documentation + + -- Laszlo Kajan <[email protected]> Fri, 23 Sep 2011 21:45:02 +0200 + +librostlab (1.0.7) unstable; urgency=low + + * renamed _map_split_in_2 to map_split_in_2 + * added blastpgp parser + * cdbs + + -- Laszlo Kajan <[email protected]> Fri, 23 Sep 2011 21:43:11 +0200 + +librostlab (1.0.6) unstable; urgency=low + + * added mapAA2int.h + Maximilian Hecht <[email protected]> Wed, 29 Jun 2011 09:50:51 +0200 + + -- Laszlo Kajan <[email protected]> Wed, 29 Jun 2011 10:50:51 +0200 + +librostlab (1.0.5) unstable; urgency=low + + * added throw() definitions to interface of flock_resource + + -- Laszlo Kajan <[email protected]> Mon, 20 Jun 2011 10:52:36 +0200 + +librostlab (1.0.4) unstable; urgency=low + + * FASTA format checking improved + + -- Laszlo Kajan <[email protected]> Fri, 10 Jun 2011 10:29:22 +0200 + +librostlab (1.0.3) stable; urgency=low + + * flock debugging added + + -- Laszlo Kajan <[email protected]> Wed, 02 Feb 2011 14:53:19 +0100 + +librostlab (1.0.2) stable; urgency=low + + * does not touch lock file any more + + -- Laszlo Kajan <[email protected]> Wed, 02 Feb 2011 13:44:10 +0100 + +librostlab (1.0.1) stable; urgency=low + + * now closes lock file before throwing an exception if locking fails + * added cwd_resource + + -- Laszlo Kajan <[email protected]> Thu, 20 Jan 2011 23:57:04 +0100 + +librostlab (1.0.0) stable; urgency=low + + * Initial release + + -- Laszlo Kajan <[email protected]> Wed, 15 Sep 2010 15:28:53 +0200 Added: trunk/packages/rostlab/librostlab/trunk/debian/compat =================================================================== --- trunk/packages/rostlab/librostlab/trunk/debian/compat (rev 0) +++ trunk/packages/rostlab/librostlab/trunk/debian/compat 2012-03-29 16:03:51 UTC (rev 10161) @@ -0,0 +1 @@ +7 Added: trunk/packages/rostlab/librostlab/trunk/debian/control =================================================================== --- trunk/packages/rostlab/librostlab/trunk/debian/control (rev 0) +++ trunk/packages/rostlab/librostlab/trunk/debian/control 2012-03-29 16:03:51 UTC (rev 10161) @@ -0,0 +1,72 @@ +Source: librostlab +Priority: extra +Maintainer: Laszlo Kajan <[email protected]> +Build-Depends: debhelper (>= 7.0.50~), autotools-dev, graphviz +Standards-Version: 3.9.3 +Section: libs +Homepage: http://rostlab.org/ + +Package: librostlab3 +Architecture: any +Section: libs +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: C++ library from the Rost Lab + * current working directory resource + * exception with stack backtrace + * file lock resource + * passwd and group structures for C++ + * effective uid and gid resource + * rostlab::bio::seq class with stream input operator for FASTA format + * umask resource + . + This package contains the shared library. + +Package: librostlab3-dev +Section: libdevel +Architecture: any +Depends: librostlab3 (= ${binary:Version}), ${misc:Depends}, +Suggests: librostlab-doc +Provides: librostlab-dev +Replaces: librostlab0-dev +Description: C++ library from the Rost Lab + * current working directory resource + * exception with stack backtrace + * file lock resource + * passwd and group structures for C++ + * effective uid and gid resource + * rostlab::bio::seq class with stream input operator for FASTA format + * umask resource + . + This package contains files necessary for developing applications with + librostlab. + +Package: librostlab-doc +Section: doc +Architecture: all +Depends: ${shlibs:Depends}, ${misc:Depends} +Description: C++ library from the Rost Lab + * current working directory resource + * exception with stack backtrace + * file lock resource + * passwd and group structures for C++ + * effective uid and gid resource + * rostlab::bio::seq class with stream input operator for FASTA format + * umask resource + . + This package contains html documentation. + +Package: librostlab3-dbg +Architecture: any +Section: debug +Priority: extra +Depends: librostlab3 (= ${binary:Version}), ${misc:Depends} +Description: debugging symbols for librostlab + * current working directory resource + * exception with stack backtrace + * file lock resource + * passwd and group structures for C++ + * effective uid and gid resource + * rostlab::bio::seq class with stream input operator for FASTA format + * umask resource + . + This package provides the detached debug symbols for librostlab. Added: trunk/packages/rostlab/librostlab/trunk/debian/copyright =================================================================== --- trunk/packages/rostlab/librostlab/trunk/debian/copyright (rev 0) +++ trunk/packages/rostlab/librostlab/trunk/debian/copyright 2012-03-29 16:03:51 UTC (rev 10161) @@ -0,0 +1,46 @@ +Format: http://dep.debian.net/deps/dep5 +Upstream-Name: librostlab +Upstream-Contact: Laszlo Kajan <[email protected]> +Source: http://rostlab.org/ + +Files: debian/* +Copyright: 2012 Laszlo Kajan <[email protected]>, Technical University of Munich, Germany +License: GPL-3+ + +Files: * +Copyright: 2012 Laszlo Kajan <[email protected]>, Technical University of Munich, Germany +License: LGPL-3+ + +License: GPL-3+ + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + . + You should have received a copy of the GNU General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + . + On Debian systems, the complete text of the GNU General + Public License version 3 can be found in `/usr/share/common-licenses/GPL-3'. + +License: LGPL-3+ + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU Lesser General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + . + This package is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU Lesser General Public License for more details. + . + You should have received a copy of the GNU Lesser General Public License + along with this program. If not, see <http://www.gnu.org/licenses/>. + . + On Debian systems, the complete text of the GNU Lesser General + Public License version 3 can be found in `/usr/share/common-licenses/LGPL-3'. Added: trunk/packages/rostlab/librostlab/trunk/debian/librostlab-doc.docs =================================================================== --- trunk/packages/rostlab/librostlab/trunk/debian/librostlab-doc.docs (rev 0) +++ trunk/packages/rostlab/librostlab/trunk/debian/librostlab-doc.docs 2012-03-29 16:03:51 UTC (rev 10161) @@ -0,0 +1,2 @@ +doxygen-doc/html/ +lib/librostlab.tag Added: trunk/packages/rostlab/librostlab/trunk/debian/librostlab3-dev.install =================================================================== --- trunk/packages/rostlab/librostlab/trunk/debian/librostlab3-dev.install (rev 0) +++ trunk/packages/rostlab/librostlab/trunk/debian/librostlab3-dev.install 2012-03-29 16:03:51 UTC (rev 10161) @@ -0,0 +1,4 @@ +usr/include/* +usr/lib/librostlab.a +usr/lib/librostlab.la +usr/lib/librostlab.so Added: trunk/packages/rostlab/librostlab/trunk/debian/librostlab3.install =================================================================== --- trunk/packages/rostlab/librostlab/trunk/debian/librostlab3.install (rev 0) +++ trunk/packages/rostlab/librostlab/trunk/debian/librostlab3.install 2012-03-29 16:03:51 UTC (rev 10161) @@ -0,0 +1 @@ +usr/lib/librostlab.so.* Added: trunk/packages/rostlab/librostlab/trunk/debian/rules =================================================================== --- trunk/packages/rostlab/librostlab/trunk/debian/rules (rev 0) +++ trunk/packages/rostlab/librostlab/trunk/debian/rules 2012-03-29 16:03:51 UTC (rev 10161) @@ -0,0 +1,25 @@ +#!/usr/bin/make -f + +# Uncomment this to turn on verbose mode. +export DH_VERBOSE=1 + +%: + dh $@ --parallel + +.PHONY: override_dh_auto_build +override_dh_auto_build: + dh_auto_build --parallel + $(MAKE) -C lib doxygen-doc + +.PHONY: override_dh_strip +override_dh_strip: + dh_strip --dbg-package=librostlab3-dbg + +.PHONY: override_dh_compress +override_dh_compress: + dh_compress -Xlibrostlab.tag + +.PHONY: get-orig-source +get-orig-source: + mkdir -p ../tarballs + uscan --verbose --force-download --destdir=../tarballs Property changes on: trunk/packages/rostlab/librostlab/trunk/debian/rules ___________________________________________________________________ Added: svn:executable + * Added: trunk/packages/rostlab/librostlab/trunk/debian/source/format =================================================================== --- trunk/packages/rostlab/librostlab/trunk/debian/source/format (rev 0) +++ trunk/packages/rostlab/librostlab/trunk/debian/source/format 2012-03-29 16:03:51 UTC (rev 10161) @@ -0,0 +1 @@ +3.0 (quilt) Added: trunk/packages/rostlab/librostlab/trunk/debian/watch =================================================================== --- trunk/packages/rostlab/librostlab/trunk/debian/watch (rev 0) +++ trunk/packages/rostlab/librostlab/trunk/debian/watch 2012-03-29 16:03:51 UTC (rev 10161) @@ -0,0 +1,4 @@ +# Compulsory line, this is a version 3 file +version=3 + +ftp://rostlab.org/free/librostlab-([0-9.]+)\.tar\.gz debian uupdate Property changes on: trunk/packages/rostlab/libzerg-perl/tags ___________________________________________________________________ Added: svn:ignore + build-area tarballs Property changes on: trunk/packages/rostlab/proftmb/tags ___________________________________________________________________ Added: svn:ignore + build-area tarballs _______________________________________________ debian-med-commit mailing list [email protected] http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-commit
