Nilesh Patra pushed to branch master at Debian Med / pilercr
Commits: 498271da by Nilesh Patra at 2021-06-18T01:35:48+05:30 Add script for fetching data - - - - - 5bc3fafa by Nilesh Patra at 2021-06-18T01:40:32+05:30 Install get-test-data script - - - - - 08d60119 by Nilesh Patra at 2021-06-18T01:40:32+05:30 Interim changelog entry - - - - - 4 changed files: - debian/changelog - debian/docs - debian/tests/data/example.fasta - + debian/tests/get-test-data Changes: ===================================== debian/changelog ===================================== @@ -1,11 +1,16 @@ pilercr (1.06+dfsg-5) UNRELEASED; urgency=medium + [ Shruti Sridhar ] * Team upload. * Add test data * Add autopkgtests - * Install docs + * Install test docs - -- Shruti Sridhar <[email protected]> Tue, 15 Jun 2021 19:25:25 +0530 + [ Nilesh Patra ] + * d/tests/get-test-data: Add script for fetching data + * d/docs: Install get-test-data script + + -- Shruti Sridhar <[email protected]> Fri, 18 Jun 2021 01:29:30 +0530 pilercr (1.06+dfsg-4) unstable; urgency=medium ===================================== debian/docs ===================================== @@ -1,2 +1,3 @@ debian/README* -debian/tests/run-unit-test \ No newline at end of file +debian/tests/run-unit-test +debian/tests/get-test-data ===================================== debian/tests/data/example.fasta ===================================== @@ -1,4 +1,4 @@ ->CP014688.1:1-39760 Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence +>CP014688.1 Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence ACGAGGTCGTTTCTGTCGACCCGCTGGCTATATTCAGGCTGGTAGATGTCGGCGTGGTCTGATTATTACC ATCACCGCTTGCTGAAGACTGATCCCCGCTGCTGATGATCGGGAGGGCTGACAAATAGTCCCCCTTGTCA GTCCGGTCGTCTTCGACACTCCCTACGCTCCCGCTTAGATATACGGCTCCGGTCCCCGTCAGCTTTACGC @@ -172,4 +172,4 @@ TCATAATCGTGCGGGGGATTGAATCTGGCGTACGCTCAATCAGATCCATCAAACCTTCCCGATCAAATCT CTGCTCACACTCATCAATCAGTGGCCTAAGAAGACCGAGCATGTCATCACAAGCACGCTGCAACTCGTTC ACAGATTTGCCCCAGTCGCGGAGGACTGCAGCGCGGTCCCAATTGTAAGGTTCCGGCCTTTCGCTCTGCA GAATGAGGCGGATATTGCTCTCACCATGCCGGGTTGCGATTTCATACATCTTACTCCCGGCCTCGTAGCG -CAGGGCACATGGCGGCATAGACTTCAGCAGGGCGCAAGATTTCCAGAAGTCTTTCTTTTCAGCAAACCTA \ No newline at end of file +CAGGGCACATGGCGGCATAGACTTCAGCAGGGCGCAAGATTTCCAGAAGTCTTTCTTTTCAGCAAACCTA ===================================== debian/tests/get-test-data ===================================== @@ -0,0 +1,21 @@ +#!/bin/bash + +# Needs ncbi-entrez-direct +efetch -db nuccore -id CP014688.1 -format fasta | head -n175 > example.fasta +mkdir -p data + +if [ -f data/example.fasta ] +then +diff -u example.fasta data/example.fasta + +if [ `echo $?` -ne 0 ] +then + echo "The data has changed, injecting new data, please check manually before upload" +else + echo "The data is same, no changes needed" +fi +fi + +mv example.fasta data/example.fasta + +echo "Done" View it on GitLab: https://salsa.debian.org/med-team/pilercr/-/compare/8f9b1f2d465443efeb409a24c2ac746eaf840e34...08d60119bae765ddfdbaa7c61cd587b72e28a06b -- View it on GitLab: https://salsa.debian.org/med-team/pilercr/-/compare/8f9b1f2d465443efeb409a24c2ac746eaf840e34...08d60119bae765ddfdbaa7c61cd587b72e28a06b You're receiving this email because of your account on salsa.debian.org.
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