Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
9582d4e9 by Andreas Tille at 2021-07-18T13:42:21+00:00
automatic update

- - - - -


2 changed files:

- debian-med-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,16 +1,16 @@
-Last-Update: Sun, 18 Jul 2021 01:42:04 +0000
+Last-Update: Sun, 18 Jul 2021 13:42:03 +0000
 
  Source                        | Vote   |     Tasks                            
               |                                 Tags                           
      
 
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    170 | {covid-19,imaging}                   
               | 
- orthanc                       |     91 | {imaging,covid-19,practice}          
               | 
+ dcmtk                         |    171 | {covid-19,imaging}                   
               | 
+ orthanc                       |     92 | {imaging,covid-19,practice}          
               | 
  orthanc-wsi                   |     49 | 
{imaging,practice,his,covid-19,oncology,laboratory} | 
- gdcm                          |     36 | {imaging-dev}                        
               | 
- dicomscope                    |     30 | {imaging}                            
               | 
+ gdcm                          |     35 | {imaging-dev}                        
               | 
+ dicomscope                    |     31 | {imaging}                            
               | 
+ amide                         |     27 | {imaging}                            
               | 
  dicom3tools                   |     27 | {imaging}                            
               | 
- amide                         |     26 | {imaging}                            
               | 
- dcm2niix                      |     23 | {imaging}                            
               | 
  htsjdk                        |     23 | {bio-dev}                            
               | 
+ dcm2niix                      |     22 | {imaging}                            
               | 
  gdcm                          |     21 | {covid-19,imaging}                   
               | 
  odin                          |     17 | {imaging-dev,imaging}                
               | 
  minc-tools                    |     13 | {imaging}                            
               | 
@@ -18,29 +18,28 @@ Last-Update: Sun, 18 Jul 2021 01:42:04 +0000
  gnumed-server                 |     12 | {covid-19,practice}                  
               | 
  pixelmed                      |     12 | {imaging}                            
               | 
  dicomnifti                    |     11 | {imaging}                            
               | 
- insighttoolkit4               |     11 | {imaging-dev}                        
               | 
+ gdcm                          |     11 | {imaging-dev}                        
               | 
  ngs-sdk                       |     11 | {bio-dev}                            
               | 
- gdcm                          |     10 | {imaging-dev}                        
               | 
  invesalius                    |     10 | {imaging}                            
               | 
  nifticlib                     |     10 | {imaging}                            
               | 
  adun.app                      |      9 | {bio}                                
               | 
+ insighttoolkit4               |      9 | {imaging-dev}                        
               | 
  openslide                     |      9 | {imaging}                            
               | 
- ngs-sdk                       |      8 | {bio-dev}                            
               | 
  plastimatch                   |      8 | {imaging}                            
               | 
- libminc                       |      7 | {imaging-dev}                        
               | 
  mia                           |      7 | {imaging}                            
               | 
  dicompyler                    |      6 | {oncology}                           
               | 
  libdivsufsort                 |      6 | {bio-dev}                            
               | 
+ libminc                       |      6 | {imaging-dev}                        
               | 
+ ngs-sdk                       |      6 | {bio-dev}                            
               | 
  nifti2dicom                   |      6 | {imaging}                            
               | 
- nifticlib                     |      6 | {imaging-dev}                        
               | 
  oscar                         |      6 | {tools,data,practice}                
               | 
  ea-utils                      |      5 | {bio}                                
               | 
  librg-utils-perl              |      5 | {bio}                                
               | 
  nifti2dicom                   |      5 | {imaging}                            
               | 
+ nifticlib                     |      5 | {imaging-dev}                        
               | 
  openslide                     |      5 | {imaging-dev}                        
               | 
  orthanc-postgresql            |      5 | {imaging}                            
               | 
  sight                         |      5 | {imaging}                            
               | 
- busco                         |      4 | {bio,covid-19}                       
               | 
  jebl2                         |      4 | {bio-dev}                            
               | 
  king                          |      4 | {imaging,typesetting}                
               | 
  orthanc-dicomweb              |      4 | {covid-19,imaging}                   
               | 
@@ -49,34 +48,36 @@ Last-Update: Sun, 18 Jul 2021 01:42:04 +0000
  bart-view                     |      3 | {imaging}                            
               | 
  biojava-live                  |      3 | {bio-dev}                            
               | 
  blasr                         |      3 | {bio,bio-ngs}                        
               | 
- emboss-explorer               |      3 | {bio}                                
               | 
+ busco                         |      3 | {bio,covid-19}                       
               | 
  getdata                       |      3 | {bio}                                
               | 
  libsbml                       |      3 | {bio-dev}                            
               | 
  melting                       |      3 | {cloud,bio}                          
               | 
+ ngs-sdk                       |      3 | {bio-dev}                            
               | 
  orthanc-mysql                 |      3 | {imaging}                            
               | 
  pbdagcon                      |      3 | {bio}                                
               | 
  pymia                         |      3 | {imaging-dev}                        
               | 
  runcircos-gui                 |      3 | {bio}                                
               | 
  stacks                        |      3 | {bio}                                
               | 
  beast-mcmc                    |      2 | {bio-phylogeny,bio}                  
               | 
+ blimps                        |      2 | {bio}                                
               | 
  elastix                       |      2 | {imaging}                            
               | 
  embassy-domainatrix           |      2 | {cloud,bio}                          
               | 
  embassy-domalign              |      2 | {cloud,bio}                          
               | 
  embassy-domsearch             |      2 | {bio,cloud}                          
               | 
+ emboss-explorer               |      2 | {bio}                                
               | 
  lagan                         |      2 | {bio}                                
               | 
- ngs-sdk                       |      2 | {bio-dev}                            
               | 
  nipype                        |      2 | {imaging-dev,imaging}                
               | 
  obitools                      |      2 | {bio}                                
               | 
  orthanc-gdcm                  |      2 | {imaging}                            
               | 
  phyutility                    |      2 | {bio,cloud}                          
               | 
  piler                         |      2 | {bio}                                
               | 
  saint                         |      2 | {bio}                                
               | 
+ sift                          |      2 | {bio}                                
               | 
  staden                        |      2 | {bio}                                
               | 
  tracetuner                    |      2 | {bio}                                
               | 
  anfo                          |      1 | {bio,cloud}                          
               | 
  biomaj3-cli                   |      1 | {cloud}                              
               | 
  bitseq                        |      1 | {bio}                                
               | 
- blimps                        |      1 | {bio}                                
               | 
  brig                          |      1 | {bio}                                
               | 
  canu                          |      1 | {bio}                                
               | 
  cat-bat                       |      1 | {bio,covid-19}                       
               | 
@@ -102,7 +103,6 @@ Last-Update: Sun, 18 Jul 2021 01:42:04 +0000
  papyrus                       |      1 | {imaging-dev}                        
               | 
  paraclu                       |      1 | {cloud,bio}                          
               | 
  perm                          |      1 | {cloud,bio}                          
               | 
- phast                         |      1 | {bio}                                
               | 
  prime-phylo                   |      1 | {cloud,bio}                          
               | 
  proalign                      |      1 | {bio,bio-phylogeny}                  
               | 
  rdp-classifier                |      1 | {bio}                                
               | 
@@ -112,7 +112,6 @@ Last-Update: Sun, 18 Jul 2021 01:42:04 +0000
  samtools-legacy               |      1 | {bio-dev}                            
               | 
  sga                           |      1 | {bio}                                
               | 
  sibsim4                       |      1 | {cloud,bio}                          
               | 
- sift                          |      1 | {bio}                                
               | 
  spaced                        |      1 | {bio}                                
               | 
  sprai                         |      1 | {bio}                                
               | 
  spread-phy                    |      1 | {bio,bio-phylogeny}                  
               | 
@@ -189,6 +188,7 @@ Last-Update: Sun, 18 Jul 2021 01:42:04 +0000
  parallel-fastq-dump           |      0 | {covid-19}                           
               | 
  pbcopper                      |      0 | {bio-dev}                            
               | 
  pbseqlib                      |      0 | {bio-dev}                            
               | 
+ phast                         |      0 | {bio}                                
               | 
  pigx-rnaseq                   |      0 | {covid-19,bio}                       
               | 
  pilercr                       |      0 | {bio}                                
               | 
  pique                         |      0 | {bio}                                
               | 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: 
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9582d4e9e0fa68521a9266744c2fa3ef9850fd3c

-- 
View it on GitLab: 
https://salsa.debian.org/med-team/community/helper-scripts/-/commit/9582d4e9e0fa68521a9266744c2fa3ef9850fd3c
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