Dylan Aïssi pushed to branch master at Debian Med / beagle
Commits: 679a060b by Dylan Aïssi at 2021-07-23T18:25:28+02:00 Update d/copyright - - - - - c79fa5b6 by Dylan Aïssi at 2021-07-23T18:26:16+02:00 Fix version - - - - - 80991c5a by Dylan Aïssi at 2021-07-23T18:28:01+02:00 Remove d/patches/*, not needed anymore - - - - - 45e1d7dc by Dylan Aïssi at 2021-07-23T18:33:40+02:00 Remove a former directory from the list in d/rules - - - - - 5 changed files: - debian/changelog - debian/copyright - − debian/patches/01_Update_htsjtk.patch - − debian/patches/series - debian/rules Changes: ===================================== debian/changelog ===================================== @@ -1,4 +1,4 @@ -beagle (5.2-210628+dfsg-1) UNRELEASED; urgency=medium +beagle (5.2-210628-1) UNRELEASED; urgency=medium * New upstream release. ===================================== debian/copyright ===================================== @@ -6,15 +6,15 @@ Comment: Remove embedded htsjdk (samtools) Files-Excluded: net Files: * -Copyright: 2013-2018 Brian L. Browning +Copyright: 2013-2021 Brian L. Browning License: GPL-3+ Files: debian/* -Copyright: 2016-2017 Dylan Aïssi <[email protected]> +Copyright: 2016-2021 Dylan Aïssi <[email protected]> License: GPL-3+ Files: debian/upstream.docs/* -Copyright: 2013-2018 Brian L. Browning +Copyright: 2013-2021 Brian L. Browning License: GPL-3+ License: GPL-3+ ===================================== debian/patches/01_Update_htsjtk.patch deleted ===================================== @@ -1,16 +0,0 @@ -Author: Dylan Aïssi <[email protected]> -Description: Update references to htsjdk. -Last-Update: 2019-09-09 -Forwarded: No - ---- a/blbutil/InputIt.java -+++ b/blbutil/InputIt.java -@@ -28,7 +28,7 @@ - import java.io.InputStreamReader; - import java.util.NoSuchElementException; - import java.util.zip.GZIPInputStream; --import net.sf.samtools.util.BlockCompressedInputStream; -+import htsjdk.samtools.util.BlockCompressedInputStream; - - /** - * <p>Class {@code InputIt} is a buffered iterator whose {@code next()} ===================================== debian/patches/series deleted ===================================== @@ -1 +0,0 @@ -01_Update_htsjtk.patch ===================================== debian/rules ===================================== @@ -8,7 +8,7 @@ export CLASSPATH=/usr/share/java/htsjdk.jar override_jh_build: mkdir SRC/ - cp -t SRC/ -r beagleutil blbutil bref imp ints main math phase vcf + cp -t SRC/ -r beagleutil blbutil bref imp ints main phase vcf jh_build --javacopts="-source 1.8" --javadoc-opts="-source 1.8" --main="main.Main" beagle.jar SRC/ jh_build --javacopts="-source 1.8" --javadoc-opts="-source 1.8" --main="bref.Bref3" bref3.jar SRC/ View it on GitLab: https://salsa.debian.org/med-team/beagle/-/compare/f8ee64f8029180aa2c381b7a7e62caeba86aee94...45e1d7dc34ed6fb09705a0bf3d4ce42ddd770b9b -- View it on GitLab: https://salsa.debian.org/med-team/beagle/-/compare/f8ee64f8029180aa2c381b7a7e62caeba86aee94...45e1d7dc34ed6fb09705a0bf3d4ce42ddd770b9b You're receiving this email because of your account on salsa.debian.org.
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